Pairwise Alignments

Query, 267 a.a., diaminopimelate epimerase from Pseudomonas simiae WCS417

Subject, 267 a.a., diaminopimelate epimerase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  137 bits (346), Expect = 2e-37
 Identities = 85/268 (31%), Positives = 133/268 (49%), Gaps = 17/268 (6%)

Query: 3   LPFVKMHAHGDDFIIIDRRGLHDPITAKVARQLGNRHTGIGFNQLAVLLDCDDAAARIKF 62
           + F KMH  G+D+I +D          K A +    HTGIG + L ++   D A   ++ 
Sbjct: 5   IKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKADFSMRI 64

Query: 63  WNPNGTLLATCGSATRGVADRLMHEAGTDS---VVLRTDRGL----LTCARAAGRQISVN 115
           +N +G+    CG+ +R V  + ++E G  +   + L T  G+    L         ++V+
Sbjct: 65  FNADGSEAMMCGNGSRCVG-KYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTAVTVD 123

Query: 116 MGEPSLDWSAVPLAEAMDTLTLPIDGNPAACSMGNPHCTFFVEDLTAVDVATVGPALEIH 175
           MG P L+  AV   +     +  +       SMGNPH   FVED+T +++  +GP LE +
Sbjct: 124 MGSP-LETEAVDFGDQFPFQSTRV-------SMGNPHLVTFVEDITQINLPEIGPQLENY 175

Query: 176 PLFPAKTNVHFVQVLDRGHIRLRIWERGGGVPLGSGSCCCGAVVNGIRRGLLDATVQVHC 235
            LFP +TNV F Q++ +  IR+R+WERG G+    G+  C   V  +  GL      +  
Sbjct: 176 HLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLHGLAGRKCDIIM 235

Query: 236 DGGTVTVHW-AGEGAVVLTGSVEPVMQG 262
           DGGTVT+ W    G +++TG    V  G
Sbjct: 236 DGGTVTIEWEEATGHILMTGPATKVFDG 263