Pairwise Alignments

Query, 271 a.a., sigma factor sigB regulation protein rsbQ from Pseudomonas simiae WCS417

Subject, 270 a.a., 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 14/259 (5%)

Query: 12  MGNGSSTLVFSHGFGCNQAMWNYLAPQFSERFRVVMYDLVGAGLSDLSAFDKAKYSSLDG 71
           +G G   L+F H +  +  MW       S+R+R ++ D    G S+ +       S+L  
Sbjct: 16  VGEGE-VLLFGHSYLWDHQMWAPQVAALSQRYRCIVPDFWAHGASEAAP---TAMSNLKD 71

Query: 72  YARDLNEIIDAFAVGPVILVSHSVSAMISTLADRQAPNRIAAHVMIGPSPRYIDADGYVG 131
           YA+ +  ++D   +    ++  SV  M        AP R+ + VM+     ++  +  V 
Sbjct: 72  YAQHMLALMDHLQIEYFSVIGLSVGGMWGAELALLAPKRVQSLVMMDT---FVGLEPEVT 128

Query: 132 GFKRGDIQDLLDTLDSNYLGWSSAMAPVIMGA---PGQPALSQELTDSFCRTEPEIAKQF 188
             K   + D +  L +       A+ P+   +     +  +  +   +      E A + 
Sbjct: 129 HKKYFTMLDTIAQLQAVPAPIVEAVVPMFFASNTLKNELPVVAQFRSALQGLSGERAVEV 188

Query: 189 ARVTFMSDNRQDVIG----LATPVLVLQSSDDLIAPVAVGEYLHSVLPNSTYCLVDNVGH 244
           AR+  M   R+D++     L  PVL++  S+D   P      +   +  S   +++  GH
Sbjct: 189 ARLGRMIFGRRDLMDEIEHLTLPVLIMVGSEDTPRPALESYLMQDTIRGSQLEVIEGAGH 248

Query: 245 CPHMSAPHACATAMHSFLA 263
              +    +    + +FLA
Sbjct: 249 ISSLEQAESVTHHLQTFLA 267