Pairwise Alignments

Query, 271 a.a., sigma factor sigB regulation protein rsbQ from Pseudomonas simiae WCS417

Subject, 318 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 45.8 bits (107), Expect = 1e-09
 Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 54/280 (19%)

Query: 5   HRNNVSVMGNGSSTLVFSHGFGCNQAMWNYLAPQFSE-RFRVVMYDLVGAGLSDLSAFDK 63
           H+   +V G G   L+  HGFG N   W    P  +   +RV   DL+G G SD    D 
Sbjct: 42  HKIRWTVAGEGQP-LILLHGFGANLGHWRKNIPAIAAGGYRVYALDLLGFGASDKPDRD- 99

Query: 64  AKYSSLDGYARDLNEIIDAFAVGPVILVSHSVSAMISTLADRQAPNRIAAHVMIGPSPRY 123
               SLD +A  +N+        P  +V +S+ A++S +     P+R    V++      
Sbjct: 100 ---YSLDLWAELVNDFWTTHIQQPAWVVGNSIGALLSLMLLVDQPDRWRGGVLL------ 150

Query: 124 IDADGYVGGFKRGDIQDLLDTLDSNYLGWSSAMAPVIMGAP------------------- 164
                  GG      + +        LGW  +    ++  P                   
Sbjct: 151 ----NCAGGLNHRPEEMIWP------LGWVMSSFAKVVNTPKIGPFLFNQVRQRFRIRQT 200

Query: 165 ------GQPALSQELTDSFC--RTEPEIAKQFARV--TFMSDNRQDVI-GLATPVLVLQS 213
                  + A+++EL D       +P   + FA +  +    + Q+++  L  P+LV+  
Sbjct: 201 LRQVYGNRNAVTEELVDLLYGPSCDPGAYEVFAAILRSPAGPSPQELLPQLQRPLLVIWG 260

Query: 214 SDDLIAPVAVGEYLHSVLPNST--YCLVDNVGHCPHMSAP 251
             D   PV+  +   +    +   Y  +   GHCPH   P
Sbjct: 261 EADPWTPVSASKIFQTADSEAVIEYLTLPATGHCPHDERP 300