Pairwise Alignments

Query, 271 a.a., sigma factor sigB regulation protein rsbQ from Pseudomonas simiae WCS417

Subject, 277 a.a., hydrolase, alpha/beta fold family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 22/279 (7%)

Query: 1   MDLR-HRNNVSVMGNGSS--------TLVFSHGFGCNQAMWNYLAPQFSERFRVVMYDLV 51
           MDL  +R  +S+ G+  S         L+F H +  + AMW        + +R ++ DL 
Sbjct: 1   MDLSSYRQQISIEGSQLSYLDIGTGPALLFGHSYLWDSAMWAPQIANLCKSYRCIVPDLW 60

Query: 52  GAGLSDLSAFDKAKYSSLDGYARDLNEIIDAFAVGPVILVSHSVSAMISTLADRQAPNRI 111
           G G S  +A  +  +S LD  +  +  ++DA  +    ++  SV AM       +AP R+
Sbjct: 61  GHGQS--AAVPENCHSLLD-ISEHMLALMDALEIETFSVIGLSVGAMWGAELVLKAPTRV 117

Query: 112 AAHVMIGPSPRYIDADGYVGGFKRGDIQDLLDTLDSNYLGWSSAMAPVIM---GAPGQPA 168
            A VM+     +I  +  +   K   + D++ T  S      SA++P+          P 
Sbjct: 118 KALVML---DSFIGFEPEITRAKYFGMLDMIQTAGSIPPQLISAISPLFFADNAKVNNPE 174

Query: 169 LSQELTDSFCRTEPEIAKQFARVTFMSDNRQDVIGLA----TPVLVLQSSDDLIAPVAVG 224
           L      +  R  PE      ++  +   R+D +  A     P LV+   +D    V   
Sbjct: 175 LVHGFEANLARLAPERIPSIVKLGRIIFGRRDTLEFAEQFTLPCLVMVGVEDKARSVLES 234

Query: 225 EYLHSVLPNSTYCLVDNVGHCPHMSAPHACATAMHSFLA 263
             +   +  S    + N GH   +         +  FL+
Sbjct: 235 YLMSDAIDGSQLVHIPNAGHISSLEQAEFVTDRLRQFLS 273