Pairwise Alignments

Query, 367 a.a., recombinase RecF from Pseudomonas simiae WCS417

Subject, 363 a.a., DNA replication and repair protein RecF from Vibrio cholerae E7946 ATCC 55056

 Score =  276 bits (706), Expect = 6e-79
 Identities = 153/367 (41%), Positives = 218/367 (59%), Gaps = 11/367 (2%)

Query: 1   MSLSRVSVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60
           M LSR+ +   RN+    +  S   N L G NGSGKTSVLEAI+LLG  RSF+S+    +
Sbjct: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 61  IQYEQLACTVFGQVELAEGGHSS------LGISRDRGGEFQIRIDGQNARSAAQLAEILP 114
           IQ E     V G++   E   SS      +GI++ R G  +++I GQ  +  AQLA+ILP
Sbjct: 61  IQNECSELFVHGRI--CEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILP 118

Query: 115 LQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAA 174
           LQLI+P+ F LL   PK RR F+DWGVFH EP F   W R ++  +QRN+ L+       
Sbjct: 119 LQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQ-SYR 177

Query: 175 SQAAWDRELCLASDEIDEYRRAYIKALKPVFEQTLSELLELEGLTLSYYRGWDKERELSA 234
             + WD+EL   +++ID++R +Y+  LK V EQ     L    + L YYRGW+K++   +
Sbjct: 178 ELSYWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPEFDIDLKYYRGWEKDQPYQS 237

Query: 235 VLATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQA 294
           +L  + +RDQQ+G+T +GP +ADLR+++ A    D+LSRGQ KL+VCALR+AQG  +++ 
Sbjct: 238 ILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSRGQLKLMVCALRVAQGQHLTEL 297

Query: 295 RRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHV 354
              QCIYL+DD  SELD   R+ L   L+    QVF++ +    + +    +     FHV
Sbjct: 298 TGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVAD--MLDESSKTFHV 355

Query: 355 EQGRITQ 361
             G I Q
Sbjct: 356 AHGVIEQ 362