Pairwise Alignments

Query, 367 a.a., recombinase RecF from Pseudomonas simiae WCS417

Subject, 374 a.a., recombination protein F from Sinorhizobium meliloti 1021

 Score =  107 bits (266), Expect = 7e-28
 Identities = 99/353 (28%), Positives = 158/353 (44%), Gaps = 22/353 (6%)

Query: 3   LSRVSVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQ 62
           L+R+ ++  RN   + L    R  +L G NG+GKT+++E +  L   R  R A    V +
Sbjct: 7   LTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAAYADVAR 66

Query: 63  YEQL-ACTVFGQVELAEG----GHSSLGISRDRGGEFQIRIDGQNARSAAQLAEILPLQL 117
                  +VF  V+  EG    G  + G   + G   ++RI+G  AR+  +L + L +  
Sbjct: 67  VGAPDGFSVFAAVDGMEGSVEIGTGTQGT--EEGQSRRLRINGTAARTVDELTDHLRVLW 124

Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQA 177
           + P    L  G    RR+FLD  V  ++P          +A+R RN  L     D A  +
Sbjct: 125 LTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDPAWLS 184

Query: 178 AWDRELCLASDEIDEYRRAYIKALKPVFEQTLSE------LLELEGL--TLSYYRGWDKE 229
           A +RE+      +   R+  +  L  + E++ S+       L L G     +    ++ E
Sbjct: 185 AIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDCAGIPAFELE 244

Query: 230 RELSAVLATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADI----LSRGQQKLVVCALRI 285
               A+LA    RD   G T  GP R+DL +R   H   DI     S G+QK ++  L +
Sbjct: 245 ERYLAMLAEGRARDAAAGRTLDGPHRSDLLIR---HREKDIEAERCSTGEQKALLVGLVL 301

Query: 286 AQGHLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHEL 338
           A   LV        + L+D++ + LD+  R AL  L++ L  Q F+T  D  +
Sbjct: 302 AHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAM 354