Pairwise Alignments

Query, 367 a.a., recombinase RecF from Pseudomonas simiae WCS417

Subject, 385 a.a., DNA replication and repair protein RecF from Bifidobacterium breve UCC2003

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 83/333 (24%), Positives = 149/333 (44%), Gaps = 18/333 (5%)

Query: 1   MSLSRVSVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60
           M +SR+++   R+   V +   P +NIL G NG GKT+++EA+ +L    S R++ +LP+
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60

Query: 61  IQYEQLACTVFGQVELAEGGHSSLGISRDRGGEFQIRIDGQNARSAAQLAEILPLQLINP 120
           I+  Q   T+   V   +G  ++   S    G  + RI+   +     +   +P     P
Sbjct: 61  IERGQTTATIRANVVDDDGQSTTYEASIHARGANRARINSGTSLYLRDIIGRIPSVSFTP 120

Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDA------- 173
           +  RL+ G P  RR  L+     +EP +M +  +  +  +QR + L+     A       
Sbjct: 121 EDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGASANTGQPVD 180

Query: 174 ---ASQAAWDRELCLASDEIDEYRRAYIKALKPVFEQTLSELL-ELEGLTLSYYRGWDK- 228
              +    W  +   A  E+   R   I  L   F    +EL    + ++L+Y   +D+ 
Sbjct: 181 AVLSGLEIWTGQFIEAGVELTRMRARVIDLLAEPFAALYAELTGNDDTVSLTYAPSFDEV 240

Query: 229 --ERELSAVLATSLQR----DQQIGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCA 282
             + +    ++   QR    +   G    GPQR DL L L    A +  S G+   +  A
Sbjct: 241 LMQDDPRLSISEHFQRIYPGEVARGVNLIGPQRDDLTLNLADMPAREFASNGEMWTMALA 300

Query: 283 LRIAQGHLVSQARRGQCIYLVDDLPSELDEQHR 315
           L++A   ++ Q    + I ++DD+ ++LD+  R
Sbjct: 301 LKMALFQVIRQRLGLRPIVILDDVFAQLDDNRR 333