Pairwise Alignments

Query, 171 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (518), Expect = 8e-58
 Identities = 96/170 (56%), Positives = 123/170 (72%), Gaps = 1/170 (0%)

Query: 1   MPTPAYLSVTGVKQGLITAGTFTQDSVGNIYQEGHEDQILVQAFSHQVIIPRDPQSGQPT 60
           MPTP Y+S+ G  QGLITAG  T DS+G+ + EGHED++LVQ F H V +P DPQSGQP+
Sbjct: 1   MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPS 60

Query: 61  GQRVHKPMMISKVFDKSSPLLFSALTSGEEVK-CRLEWLRTSSAGTQEHYFTIELEGATI 119
           GQRVHKP   +   +K+ PLL++AL+SGE++K   L+W RTS  G QE++FT +LE A+I
Sbjct: 61  GQRVHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASI 120

Query: 120 VDIQSRMPNCQDPDNAHFTHLEDVYFTYRKIVWTHEVSGTSGSDDWRSPV 169
           VDI   MP+CQDP  + FT    V  +YRKI W H  +GTSGSDDWR P+
Sbjct: 121 VDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPI 170