Pairwise Alignments

Query, 165 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  154 bits (388), Expect = 9e-43
 Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 1/160 (0%)

Query: 1   MAKDVSVAPKERINITFKPAVGGAQEEVELPLKLLVLGDFTQREDVRKLEDRKPIAIDKN 60
           M+K+ SVAPKERINI + PA G AQ EVELPLK LV+GDF    +   LE+R  + +DKN
Sbjct: 1   MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQTPLEERATVTVDKN 60

Query: 61  TLDDVLAKQALSLTLNVPNRLQEDADVEELAIQVSINSMKDFNPANLVEQVPELHKLMAL 120
             + V+ +  L +T  V N+L +D +  EL ++++  S+ DF P  +  QVPEL KL+ L
Sbjct: 61  NFEAVMRESELKITATVKNKLTDDENA-ELPVELNFKSLADFAPDAVASQVPELKKLIEL 119

Query: 121 REALMALKGPLGNTPSFRKAIEQALADDDSRARVLAELGL 160
           REAL+ALKGPLGN P+FR+ ++  L  ++SR ++LAEL L
Sbjct: 120 REALVALKGPLGNIPAFRERLQSLLNSEESREKLLAELNL 159