Pairwise Alignments

Query, 595 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

 Score =  424 bits (1091), Expect = e-123
 Identities = 236/608 (38%), Positives = 351/608 (57%), Gaps = 32/608 (5%)

Query: 1   MSFNRYYQSELSALRQLGRQFSERNPALAPFLAEAGQDPDVERLLEGFAFLTGRLRQKLD 60
           M+ ++Y++ EL+ L++ G++F+E +P L+ FL     DPDVERLLEGFAFLT RLR+K++
Sbjct: 1   MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVE 60

Query: 61  DELPELTHSLMHLLWPNYMRPMPAFSMLQFDPLKHSGPDVCVARGTPVESAAVNGERCRF 120
           DE PELTHS++++LWPNY+RP+P+ S++ F+P K       + R T ++S  V G  C F
Sbjct: 61  DEFPELTHSIINMLWPNYLRPIPSMSVVAFEPDKSVSEKQVIPRNTQLDSKPVFGTACHF 120

Query: 121 RTCYATQVLPLRLSALEYGSRAGRGMLSLRLEMSAEGNFSEWTLNRLRLHFAGDRYISQE 180
            TC    + P++   +          + + L M  +    +  L+ +R +  GD+Y SQ 
Sbjct: 121 NTCRDVALYPMQCQGVHAEHTREATTIQISLRMLGDMTVGDAKLDTVRFYLGGDKYSSQT 180

Query: 181 LYLGLLRHLEGIELLPLGHDGLPVNGVDGQALSLRLGADQVQPVGFSEEQALIPYPQNTF 240
           LYL L  +L+ +              ++ Q +   L AD    VGFS +QAL+PYP+N +
Sbjct: 181 LYLWLHHYLQKMT-------------IEVQGVEFALPADAFSTVGFSSDQALLPYPKNVY 227

Query: 241 PGYRHLQEYFAFPDKYLFVDVGGLGVLQELPVELLKQVSG-VMLRFELRSPWGESRQPTL 299
            GYR LQEY +FP+ + F DV G    + LP    K VSG   LR           +   
Sbjct: 228 DGYRILQEYLSFPEAFHFFDVKGFA--KALP----KAVSGDFTLRIHFSKTLPADTRVRQ 281

Query: 300 ENVKLYCTPIVNLFKHDAVPIRLDGKQDEYLLVPGEYSRENASVFSVDSVTGWQPGG--- 356
           +N +LYCTP++NLF+HDA PI L G++ EY +VP      +  +FSVD V GWQ      
Sbjct: 282 DNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEG 341

Query: 357 ---RGYK-TYVPFESFEHDVDNDLSDGPASYSIRQRPSTQHAGLETWLAFGNGPGS---- 408
              RG K  Y  FESF+H+V+         Y  R + S +  G +++++F  G  +    
Sbjct: 342 KRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSMG 401

Query: 409 AQQTLSIELTCTNHNLPRLLQLGDINLPCEQTPEGLSFRNICAPTASFPPPLDQDFLWRL 468
             + +SI+LTCTN  LP  L +GDI +  + +P   +F+NI  P+ S  P LD   LW L
Sbjct: 402 VDEAVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTL 461

Query: 469 ISNLSLNYLSLSDINALKVILQTYDLPRYHDRQAQKISERKLGAMRSVSHTAVDRLHRGL 528
           ISNLSLNYLSL   +AL  +L+ YD     DRQA++++  +L  +  +    VD++ RGL
Sbjct: 462 ISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRGL 521

Query: 529 PFRGIRIDLSIDPQGFLGHGEVFVFASVLNEFFALYASLNAYHELRVTS-TQGDVYLWPP 587
           P RG++  L +D  GF   G++F+F +VL+ FFALYAS+N++HEL V + +  + Y W  
Sbjct: 522 PVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGT 581

Query: 588 RMGQQPLL 595
           + G QPL+
Sbjct: 582 QSGMQPLI 589