Pairwise Alignments

Query, 810 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  652 bits (1681), Expect = 0.0
 Identities = 383/860 (44%), Positives = 518/860 (60%), Gaps = 71/860 (8%)

Query: 1   MMNVDLQQLIQTLTAQARRDLVRAAERCLTRGGREVLVEDLLLALLEHQDGLLVRAMADA 60
           M+ ++L  LI  L AQ++  L +AA  C+ R   EV +E  L  LL++    +   +  A
Sbjct: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60

Query: 61  GIEAGELQATLQP--KGEASASRNPVFALALVQWLQQALMVAHVELRQAEVDHGALLLAL 118
           G+E  +++  +      E      P F+  LV+ LQ+A +++  EL QAE+  GA+ LA 
Sbjct: 61  GLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAA 120

Query: 119 LRHPLQYAGSAYQVL---LSRLDVQRVHGFVLGQAPCPGPAPT-----------VDSLLE 164
           L    +Y       L   ++R ++++    +L  +     A T            ++ L 
Sbjct: 121 LTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLG 180

Query: 165 RFTHDLTRQAREGRIDPVLCRDAEIGQLIDILMRRRKNNPILVGEAGVGKTAVVEGLALR 224
           RF  ++T QAR G +DPVL R+ E+  ++DIL RRRKNNPI+VGEAGVGK+A++EGLALR
Sbjct: 181 RFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALR 240

Query: 225 VVTAQVPEPLRDVRVLTLDMGLLQAGASIKGEFERRLKGVIDEVNASMKPVILFIDEAHT 284
           VV  +VP  L++V + +LD+G LQAGAS+KGEFE+RLKGVID +  S KP+ILFIDEAHT
Sbjct: 241 VVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHT 300

Query: 285 LVGAGAQAGASDAANLLKPALARGELRTIAATTWSEYKKYFEKDPALARRFQPVLVGEPS 344
           L+G+G Q G SDAANLLKPALARGEL T+AATTW EYKKYFEKDPAL RRFQ V + EP+
Sbjct: 301 LIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPT 360

Query: 345 VEQAVSILRGLVSVYERSHGVYVRDDAVVAAAQMSARYLSGRQLPDKAVDVLDTACARLR 404
           ++QAV ILRGL SVYE++H V + DDA+ AAA++SARY+SGRQLPDKA+DVLDTACAR+ 
Sbjct: 361 IDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIA 420

Query: 405 TRRDTAPEALQRFYAEQAEGVRQHQAISRDRQEGFPVDEQVLHGLNLRMETMESERQHLE 464
               T P+ L        +   +   + R +  G  VD + L  L  +    E+E+  L 
Sbjct: 421 INMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALT 480

Query: 465 QCWLEQPTSTQ------------------------------------------------- 475
           Q W +Q +  +                                                 
Sbjct: 481 QSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTALQEQYQALDAIDHAERLMHP 540

Query: 476 QVCPRLVAEVISGWTGIPVEQLAFEHSARVLGLADALRARILGQEHAVQALDRNLRAVAA 535
           QV    +AEVI+ WTG+PV+Q+  +   ++  L   L   I GQE A++ + R+L    A
Sbjct: 541 QVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARA 600

Query: 536 GLNKVDAPVGVFLLVGPSGVGKTETALALGDLLYGGERFVTTLNMSEFQEKHSLSRLIGA 595
            L +   P G FLLVGPSGVGKTET + L + LYGG++F+TT+NMSE+QEKH++SRLIG+
Sbjct: 601 DLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGS 660

Query: 596 PPGYVGFGEGGVLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQIFDKGVANDGEGREIDF 655
           PPGYVG+GEGGVLTEA+R+ PYSVVLLDEVEKA PEVLN+FYQ FDKG   DGEGR ID 
Sbjct: 661 PPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDC 720

Query: 656 RNTLILMTSNLGSECIGELCAGGQRPEMHVLQEAIRPLLRDHFKPALLARIRVVPYYPVT 715
           +N +  +TSNLG + I +        E   L EA+ P L   FKPALLAR+ V+PY P+ 
Sbjct: 721 QNIVFFLTSNLGYQTIVDYA-----DEPAKLDEALYPELAAFFKPALLARMEVIPYLPLG 775

Query: 716 GEILNDLTRLKLERLGQRLSLRKLA-FSYTPGLVAHMAEHCSHGDSGARFIDQWIELHLL 774
            E+L  + R KL RL +    R  A       L+  +    +  ++GAR ++  IE  LL
Sbjct: 776 KEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLL 835

Query: 775 PQVVDRLLRAMAQDEPLTHV 794
           P V   LL  +A+  P+  +
Sbjct: 836 PPVSLALLNKLAERAPVERI 855