Pairwise Alignments

Query, 286 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

 Score =  126 bits (317), Expect = 4e-34
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 60  NMLLAAAWELLSQVAQLKASPARESLQALNDQLSSAISAFEAHALHLGAETSQVMSARYV 119
           N+L+ AA  L     +++     ++++ +  Q    I A E      G E + +M+ RY+
Sbjct: 37  NVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAYRYI 96

Query: 120 LCSVIDEAVVTTPWGSCSDWSKRSLLSRFHNETFGGEKFFQLLERLSRDPVKHIAMLELM 179
           LC+ +DE+V+ T WG+ S W++ S+LSRFHNET+GGEK F +L RL  +P ++ A+L  +
Sbjct: 97  LCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQALLAFI 156

Query: 180 YLCLALGFEGKYRVMERGRGQLEAVQDAVYRQIRHVRGDRVPLSISPERGKAPRGRIRIV 239
           Y CL LGFEGKYRVME G+ + E V   +++ +  +  +  P  ++       R +  + 
Sbjct: 157 YHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLE-ESEPQDLTRPTDHVVRAKYTLS 215

Query: 240 SAM--WAA-VGVLACLLVMYSGFAWVLSQEREAALQPL 274
             M  W+   G +   + ++ G+++VL  +    L  L
Sbjct: 216 RQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQL 253