Pairwise Alignments

Query, 1111 a.a., type VI secretion protein VasK from Pseudomonas simiae WCS417

Subject, 1179 a.a., type VI secretion protein IcmF from Pseudomonas stutzeri RCH2

 Score = 1009 bits (2609), Expect = 0.0
 Identities = 574/1180 (48%), Positives = 752/1180 (63%), Gaps = 70/1180 (5%)

Query: 1    MNAFFKGVGTVLRKSWVYSLLLVLSCALLVWFFGPLLAVDDYRFWQSPTSRLLTISGLLL 60
            M  FF  +G VLR++WV+SLLLVL  A++VWF GPLLAVDDYRFW++ T+RLL+IS L L
Sbjct: 1    MKTFFGKLGAVLRRTWVWSLLLVLLLAVVVWFVGPLLAVDDYRFWEASTARLLSISVLFL 60

Query: 61   LWGLAMVGMGARRTARLNQPEE----HERHQRRALINEEIRQVRARFKEALQALKTSRRY 116
             WGLAMV    R +AR  +  E     E+ +R  LI EE +++R RFK+AL+ LKTS  Y
Sbjct: 61   GWGLAMVFTSWRASARRKRDAEDQDVQEQLRRDGLIGEEQQELRHRFKQALRTLKTSSLY 120

Query: 117  GERSERWRDELPWYLLIGEQGSGKTSLLAASGLPSPFDHPDAAPL----GAASWCDWYFA 172
              RSE+WR ELPWYLLIG QGSGKTSLL  SGL  P +  +   L        + DWYFA
Sbjct: 121  RGRSEKWRSELPWYLLIGPQGSGKTSLLDFSGLDFPLNRSEQQRLTKDVSGTRYADWYFA 180

Query: 173  EDAVLVEAAGRYLGQPDPSVDAAGWSTLLDLLKWRRRSRPLNGVVVTLSADTLSSSNEHD 232
            + AVL++ AGRYL QPD +VD + W TLL LL+ +RR+RPLNGV+V L  D L   +E +
Sbjct: 181  DHAVLIDTAGRYLTQPDAAVDGSVWDTLLGLLR-KRRARPLNGVLVNLPVDQLQGGSELE 239

Query: 233  LERHARHVRTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLGGDL-- 290
            LE  AR  R RL +I Q L+VDVPVYLVL+++DR+ GF +FF+    + ++QVLG     
Sbjct: 240  LENLARQTRQRLHEIHQRLNVDVPVYLVLSKADRILGFDDFFEQLSREESDQVLGASFRK 299

Query: 291  ---GTDLAQVRDVFENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARIGDALCLFIE 347
               G+D   VR  FE LL+RL   +I R+HQER+ +RRG +LDFP Q+ +IG+ L LFIE
Sbjct: 300  EQNGSDAQVVRQEFEELLRRLNSQVILRMHQERDTQRRGRILDFPHQLGQIGERLSLFIE 359

Query: 348  AAFSVNRNQPINALRGFYLTCA----KTVDV----------------------RPHFVQG 381
             AF+ NR Q  + LRGFYLT A    +T+D                       R  F+  
Sbjct: 360  LAFAGNRYQRASQLRGFYLTSAPQLRETLDPLTAGIGRQLGLSSSALPTFRSGRARFINQ 419

Query: 382  LFKRVIFAEADQAGLLTPERQRIHRRHGWMALAATVVIGTVGAVWAHSYSFNHQRLLQLT 441
            L  RVIF EA+ AGL   E +RI      +   A   +   GA WA ++S NH+RL QL 
Sbjct: 420  LLSRVIFPEAELAGLDQREVRRIDWGQRALYAGAFGCLLLFGAAWALNFSGNHERLEQLR 479

Query: 442  GL---IHTQTGTPPGADESHALLTLLDSRLAATQVFSPQAQARWIDRAGLYQGALSIAPL 498
             +   + ++  T    DE+   L  LD+  AATQVF P+ +  W+ R GLYQG      L
Sbjct: 480  DIAQRLGSERKTIEAGDEALRTLKALDASYAATQVFPPKDEVSWLRRGGLYQGEAVDPTL 539

Query: 499  AAAYEHTLQQRFLPYVATVLEGRVRGSLGDREQLLDNLRAYLMLNLRERRDNAWLAEYVS 558
              AY   L+   LP VA  LE ++R +L DREQLL +LRAYLMLNL ERR+ A+L ++++
Sbjct: 540  HEAYRRDLENLLLPRVARQLEAQIRANLNDREQLLGSLRAYLMLNLAERREAAFLKDWLA 599

Query: 559  GQWS----GDSSANKRLNEHFARLLEQPFLA-PLDEALVARARLVLRGESLAEVVYRALR 613
              WS    G++ A + LN HFARLLE+ F A  L++ LVA+AR  LR ESLA VVYR LR
Sbjct: 600  ADWSLRHSGNAVAQQGLNTHFARLLEESFAAYQLNDNLVAKARAQLRSESLAAVVYRMLR 659

Query: 614  EQARNVEPYPL-----AEGPAFSRVEPPIPGFYTRK-YLQLFEQQGTQMVHAIAQDNWVL 667
            +QARN+  Y L      +   F   +  IPGFYT++ Y +LF  QG  +V  I +DNWVL
Sbjct: 660  DQARNLPDYRLNTQLGPQASLFVGGDYTIPGFYTQRGYQKLFVAQGADLVSEILRDNWVL 719

Query: 668  GEGGDLGAADLRRLMLVLEQRYFSEYADVWSDALGRIRLRESGSLQQGAEYLASLTSAQS 727
            GEG  L A DL RL++ +EQ YF +YA  WS+A+ ++ +  +GS  QGA  LA LT+A S
Sbjct: 720  GEGDSLSAKDLGRLLVEMEQLYFRDYAAHWSEAIAQLNILPAGSAAQGAAQLAGLTAANS 779

Query: 728  ALVQLLQQVRENTRLVSVSD------RLETAVQPVAG-LG-----AVTSRSLARAGL--- 772
             L+QLL +VRENTR   +++       L  A Q   G LG     A  +   A+A L   
Sbjct: 780  PLLQLLLEVRENTRFAGLAEATAGAGELAEAAQGAGGKLGKAAKLATAAAEQAQAALLKN 839

Query: 773  -PDNARRALQRRFEPLHQLLDEQQNPGGELTQALRLLDELQLQLSAVSRDSSPEQAAFKM 831
             PD AR+ L+RRF PLHQLLDE    G EL+ +L+ LD LQLQL++++  S+PEQAAF+M
Sbjct: 840  TPDTARKTLERRFAPLHQLLDENGAAGPELSASLQALDALQLQLASLAHASAPEQAAFEM 899

Query: 832  ARQRMDGQQPLLGNLRDTAARFPQPLKGWFEGIADQSWRQLLDDAYGFVNQHYQNEVYGF 891
            A+ RM GQ+  +  LR +AAR PQP+  W   +A+ SW  +L DAY ++NQ Y+NE+Y  
Sbjct: 900  AKARMGGQRDAINQLRSSAARLPQPVGKWLGLLAEDSWSLVLTDAYHYLNQRYRNELYAS 959

Query: 892  YAKAIQRRYPFDAHAGSDVALGDFQAFFKPRGAMARFYESYLRPFVIVEGNRYRLRGIEG 951
            Y  +++ RYPF AH+ SDVAL DF+ FFK +G    F+E YL+PFV     +Y+LR ++G
Sbjct: 960  YRGSLRERYPFSAHSASDVALADFREFFKAQGLADSFFERYLKPFVSGSAGQYQLRRVDG 1019

Query: 952  RSLPMSRSLLEQLTRAQIIRQGFFTEDQGELAVRFTLAPYSLDQAVSRATLRVGDQQLEY 1011
            R LP+S   L Q++RAQ IR+ FF E+  E  + F L PYSLD ++ RA  R G+QQLEY
Sbjct: 1020 RGLPLSEHFLAQMSRAQTIRRSFFAENPNEPQILFKLEPYSLDSSLGRADFRFGNQQLEY 1079

Query: 1012 RHGPIVPVAFHWPNEAENGRSSLVLERGAERPLGIEKDSGAWSLFRFFDLMQSEPASGRD 1071
            RHGPIV  AF WP EA++GR+SLV+E    R +GIEK++G WSLFR  DLMQ +  SGRD
Sbjct: 1080 RHGPIVQTAFRWPAEADDGRTSLVVEELGGRRVGIEKNTGPWSLFRLIDLMQVDYHSGRD 1139

Query: 1072 AQVLKADLAGLRANYLLTSQRDSSPFQMATWRTFRLPEQL 1111
              +LKADL GLRANYLL +QR  +PF +A  R F+LP  L
Sbjct: 1140 VLMLKADLGGLRANYLLHAQRSPNPFDLALLRGFKLPATL 1179