Pairwise Alignments

Query, 1111 a.a., type VI secretion protein VasK from Pseudomonas simiae WCS417

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  293 bits (749), Expect = 7e-83
 Identities = 294/1206 (24%), Positives = 503/1206 (41%), Gaps = 127/1206 (10%)

Query: 4    FFKGVGTVLRKSWVYSLLLVLSCALL-----VWFFGPLLAVDDYRFWQSPTSRLLTISGL 58
            F  G+   L+ + V +L ++L    +     +W+ GP L V  Y+  +S  +R++  S L
Sbjct: 4    FIVGIVRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVA-SSL 62

Query: 59   LLLWGLAMVGMGARRTARLNQPEEHERHQRRALINEEIRQVRARFKEALQALKTSRRYGE 118
              L  LA+ G+   R  +  + E+    Q R    + I+    R +  L  +  + +   
Sbjct: 63   FTLGCLAVWGIWQWRKLQAFKSEQKREEQLR---QDPIKVYEQRQEVELNQVMLNMKQSL 119

Query: 119  RSERWRDELPWYLLIGEQGSGKTSLLAASGLPSPFDHPDAAPLGAASW----CDWYFAED 174
                +   LPWYL++G + +GKTSL+  SG    F     A  G  S      DW+  ++
Sbjct: 120  NKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRAS-GQKSENPYSFDWWIGDE 178

Query: 175  AVLVEAAGRYLGQPDPSVDAAG------WSTLLDLLKWRRRSRPLNGVVVTLSADTLSSS 228
            +VL++  G  L Q + S +  G      W   +D L   R  RPLNG+V+ L    L+++
Sbjct: 179  SVLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATA 238

Query: 229  NEHDLERHARHVRTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLGG 288
               + + +A  +R RL+++ +TL   +PVY+ LT+ D L GF  FF        E+VLG 
Sbjct: 239  TASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGF 298

Query: 289  DLGTD--------LAQVRDVFENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARIGD 340
                D        L +    +   + R+ G L   +     +E R  +  F RQ++ + +
Sbjct: 299  TFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKE 358

Query: 341  ALCLFIEAAFSVNRNQPINALRGFYLTCA----------------------------KTV 372
             L  F + A + ++      +RG Y T                              +  
Sbjct: 359  ILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAK 418

Query: 373  DVRPHFVQGLFKRVIFAEADQAGLLTPERQRIHRRHGWMALAATVVIGTVGAVWAHSYSF 432
            +   +F Q LF  +I+ EA  A       +   R  G   +A +V    +   W  +Y  
Sbjct: 419  NSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLN 478

Query: 433  NHQR---LLQLTGLIHTQTGTPPGADESHALLTLLDSRLAATQVFSP-QAQARWIDRAGL 488
            N Q    +L        Q  T         +L  L+    AT  F   + + ++I   GL
Sbjct: 479  NVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGL 538

Query: 489  YQGALSIAPLAAAYEHTLQQRFLPYVATVLEGRVRGSLGDREQLLDNLRAYLMLNLRERR 548
            YQG      +   Y + L+ RFLP +       +  +  D E+L   LR Y ML  +  R
Sbjct: 539  YQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETDEEKLAV-LRVYRMLVDKSGR 597

Query: 549  DNAWLAEYVSGQWSGDSSANKRLNEHFARLLE-------------------QPFLAPLDE 589
               ++ +Y +  W    S  +++ E     L+                   +  + P D+
Sbjct: 598  YQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDK 657

Query: 590  ALVARARLVLRGESLAEVVYRALREQARNVEPYPL----AEGPAFSRVEPP--------- 636
             ++ARA++ L      + VYR L+  A+ V    +      GP F  V            
Sbjct: 658  -VIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLF 716

Query: 637  IPGFYTRKYLQLFEQQGTQMVHAIAQ-DNWVLGEG--GDLGAADLRRLMLVLEQRYFSEY 693
            IP   T++    +    ++ V  +A  D+WVLG+        AD + L   +   Y ++Y
Sbjct: 717  IPQMLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADY 776

Query: 694  ADVWSDALGRIRLRESGSLQQGAEYLASLTSAQSALVQLLQQVRENTRLVSVSDRLETAV 753
             + W  AL  I ++    +      L ++TS    + +LL+ + +NT+L S   + E+A+
Sbjct: 777  TNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYSALPKDESAL 836

Query: 754  QPVAGLGAVTSRSLARAGLPDNARRALQRRFEPLHQLLDEQQNPGGELTQALRLLDELQL 813
            + +         S+            ++  F  L+ +L    +    +T+ L  +DEL+ 
Sbjct: 837  KELLKSPKYKVASM------------IETPFADLNGMLKPVGSKPAYMTEVLASVDELKS 884

Query: 814  QLSAVSRDSSPEQAAFKM--ARQRMDGQQPLLGNLRDTAARFPQPLKGWFEGIADQSWRQ 871
             L ++        AA     AR ++    P+   L+  ++  P+PL      +AD+SW  
Sbjct: 885  YLKSIQDAPDVGMAALDATKARVKLVNADPIY-TLKRISSGLPKPLDSMMAKLADESWYV 943

Query: 872  LLDDAYGFVNQHYQNEVYGFYAKAIQRRYPFDAHAGSDVALGDFQAFFKPRGAMARFYES 931
            +  +A   +   +  +VY  +   +  RYPF+  +  DVAL DF+AFF P G +  FY  
Sbjct: 944  VKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQ 1003

Query: 932  YLRPFVIVEGNRYRLRGIEGRSLPMSRSLLEQLTRAQIIRQGFFTEDQGELAVRFTLAPY 991
             L+ F+        +   +     + + +L+Q+ +AQ IR+ FF   +G L V F++ P 
Sbjct: 1004 QLKMFI---DENISVASDDSAQSIIRKEVLDQIKQAQKIREAFFNR-KGILDVSFSVEPL 1059

Query: 992  SLDQAVSRATLRVGDQQLEYRHGPIVPVAFHWPNEAENGRSSLVL-----ERGAERPLGI 1046
            SL     R+ L V  Q L Y HGP   V   WPN   +   S V         + R L I
Sbjct: 1060 SLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQI 1119

Query: 1047 EKDSGAWSLFRFFDLMQSEPASGRDAQV-LKADLAGLRANYLLTSQRDSSPFQMATWRTF 1105
            +   G W+ FR  D  Q +  S     V  K  + G    Y + ++ D++PF    +++F
Sbjct: 1120 Q---GPWAFFRLLD--QGDVVSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSF 1174

Query: 1106 RLPEQL 1111
            +L + L
Sbjct: 1175 KLSKTL 1180