Pairwise Alignments

Query, 691 a.a., PTS sugar transporter subunit IIC from Pseudomonas simiae WCS417

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 9e-38
 Identities = 83/253 (32%), Positives = 141/253 (55%), Gaps = 7/253 (2%)

Query: 431 SHKALARQANELSRIQQISDYDFYLEFQPQVSTRTGLCTGCEALMRARDAQGKVHSPWEF 490
           + +A  R   E S    + + +F L FQP++  +TG  TGCEAL+R +   G++ SP  F
Sbjct: 415 TERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQK-DGRLISPMSF 473

Query: 491 LQWLAQAQLMPDVDVWVASQAVRQYQKWQK-LGFVLPMTINISSATLTDAAYGERLVEIL 549
           +    +  ++  +  WV  Q+ R  ++WQK   + +P+ IN++S    DA+    + ++ 
Sbjct: 474 IPVAEETGIIIPIGRWVIEQSCRVLREWQKKYNYAIPIAINVASQQFADASLVSDIKQMA 533

Query: 550 AQAHGH---VSVEITEDALVGDIQVTRQTIQKLQAIGAKVYIDDFGTGFSALSYLHQFPV 606
            +       + +EITE +L+ DI++    +++L++ G  + +DDFGTG+S+LSYL   P+
Sbjct: 534 LRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPI 593

Query: 607 DFIKIDRSFVVAQRDPKGAQVMTGMLRFCEALNLGVVVEGVETAEQLAFLNTGAELIIQG 666
             +KIDR FV     P  + + + +L   + LNL +V EG+E   QL +L +    I QG
Sbjct: 594 TTMKIDRCFV--SDLPGDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQG 651

Query: 667 WYFSKALPADQLE 679
           +YFS+ LP    E
Sbjct: 652 FYFSQPLPQADFE 664