Pairwise Alignments

Query, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

Subject, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  177 bits (449), Expect = 2e-49
 Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)

Query: 5   KKFLLAAA-VSMAFSATAMAE---TLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAK 60
           KK+L+A A ++   S    A+   T++ GIE AYPPF+  +A G++ GFD D+ +ALCA+
Sbjct: 4   KKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCAE 63

Query: 61  MKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKA 120
           M+VE C++   DWDGIIP+L A+K+D +++++SITEERK  VDFT  Y     +FIA K 
Sbjct: 64  MQVE-CKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKG 122

Query: 121 TADFKTDAAYLKGKVIGAQRATLAGTYLEDKLPDT-EAKLYDTQENAYLDLTSGRLDGIL 179
            AD       LKG  IG QRAT    Y+ D   DT +   Y + + AYLDL +GR+  +L
Sbjct: 123 -ADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVL 181

Query: 180 ADKYVQYEWLKSK-DGSAYEFKG----DPVVESDKIGIAVRKGD-PLRERLNKALAEIKA 233
            D     E + +K  G AYEF G    DP    + +GIAVRK D  L E+L+ A+  ++ 
Sbjct: 182 GDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALRE 241

Query: 234 DGTYKKINDKYFPFSI 249
            G Y++I  KYF + +
Sbjct: 242 KGIYQQIQAKYFKYDV 257