Pairwise Alignments

Query, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

Subject, 260 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  162 bits (409), Expect = 8e-45
 Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 11/254 (4%)

Query: 5   KKFLLAAAVSMAFSATAMAETLKMGIEAA-YPPFNNKDASGNVVGFDKDIGDALCAKMKV 63
           K   LAAA+++  +ATA A+ +K+GI A  YPPF + DASGN  G++ +   A+CA+ K+
Sbjct: 6   KLVALAAALAITGAATASAQQVKVGIAAEPYPPFTSPDASGNWEGWEIEFMKAMCAEAKL 65

Query: 64  EKCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKATAD 123
           + C V    WDGIIPAL +KK D ++ S+SIT ER   +DF+D YY+     I  K   D
Sbjct: 66  D-CVVTPVAWDGIIPALTSKKIDMIIGSMSITAERLKTIDFSDKYYNTPTGIIGAKGD-D 123

Query: 124 FKTDAAYLKGKVIGAQRATLAGTYLEDKL--PDTEAKLYDTQENAYLDLTSGRLDGILAD 181
            K     L GK IG Q +T+   Y          E K Y TQ+ A  DL +GR+D + AD
Sbjct: 124 IKPTPEGLAGKTIGVQVSTVHQAYAMKHFAPAGVEVKEYQTQDEANQDLAAGRVDAVQAD 183

Query: 182 KYVQYEWLKSKDG-SAYEFKGDPVVESDKI----GIAVRKGD-PLRERLNKALAEIKADG 235
                 +LKS  G    ++KG+   + D I    G+ +RKG+  L+E++N A+  I+ +G
Sbjct: 184 AIALDAFLKSDQGKQCCDYKGEVAEDVDVIGPGVGVGLRKGETELKEKVNAAIKAIRENG 243

Query: 236 TYKKINDKYFPFSI 249
           TY   + KYF F I
Sbjct: 244 TYDAFSKKYFDFDI 257