Pairwise Alignments

Query, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

Subject, 250 a.a., L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data) from Marinobacter adhaerens HP15

 Score =  155 bits (393), Expect = 6e-43
 Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 8/251 (3%)

Query: 5   KKFLLAAAVSMAF---SATAMAETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKM 61
           KK + AA+ ++A     A A    L++  +  Y PF  KD +G + GF+ ++ +A+C +M
Sbjct: 2   KKMIFAASCALALIAGGAQAQERDLRIAFDVPYEPFEYKDENGELTGFEVELAEAMCEEM 61

Query: 62  KVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKAT 121
               CE  +  WDG+IP L A+KFD ++SS+SIT ER   V F++PYY+    +  P++ 
Sbjct: 62  NAN-CEFVIQAWDGMIPGLLARKFDLIMSSMSITPERAERVLFSEPYYNTPGGWFGPESF 120

Query: 122 ADFKTDAAYLKGKVIGAQRATLAGTYLEDKLPD-TEAKLYDTQENAYLDLTSGRLDGILA 180
               TD + ++GK +G QR T   TY+ + +      K Y T ++  LDL   RLD +  
Sbjct: 121 NTDVTDMSAMEGKTVGVQRGTTMDTYVTENMGGIVTIKRYTTADDMVLDLEGQRLDVVFV 180

Query: 181 DKYVQYEWLKSKDGSAYEFKGDPVVESDKIGIAVRKGD-PLRERLNKALAEIKADGTYKK 239
           D  V  + + +K+G  ++  G+ V   + +G+A+R+ D  L E +N AL  +K DGTY  
Sbjct: 181 DYPVGEQTVLTKEG--FKEVGEAVKLGEGVGVAMRQRDTDLAEEVNAALRTLKEDGTYDT 238

Query: 240 INDKYFPFSIE 250
           I  KYF + I+
Sbjct: 239 IMQKYFAYDIK 249