Pairwise Alignments

Query, 327 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

Subject, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

 Score =  135 bits (341), Expect = 1e-36
 Identities = 89/324 (27%), Positives = 164/324 (50%), Gaps = 9/324 (2%)

Query: 6   RALLCAATLFAAGLAQAADPIV------IKFAHVVAENTPKGQGALLFKKLAQERLPGRV 59
           R LL A T  A GL+ AA          I+ ++ + E+ P G G    +    ++  G++
Sbjct: 2   RKLLLATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSGGKL 61

Query: 60  KVEVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQYTQQVQIYDLPFLF-NDLAAVDR 118
           K+  +   +L GD +  +AL  G  + +  S +        + ++DLPFLF N   A   
Sbjct: 62  KLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEAYTV 121

Query: 119 FQAAQGKALLTAMQDKNILGLAYWHNGLKQLSSN-KALHEPKDARGLKFRVQASSVLEEQ 177
                G  +   ++   ++ LAYW NG + LS++ + + + +D  G+K RV  +++  + 
Sbjct: 122 LDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFLDT 181

Query: 178 FKAIRANPRKMSFAEVYQGLQTGTVNGTENTWSNYESQKVNEVQKYFTESNHGLIDYMVI 237
           F+ + AN   M+F EV+  L+T  ++  EN +   ++ K  EVQKY TE+NH    ++ +
Sbjct: 182 FQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPFLFL 241

Query: 238 TNATFWNGLPPDIRSTLEQIMVEVTVEVNKQAEALNQSAKQKIIDAKTSEIIELTPEQRQ 297
            +   ++   P+ ++ L +  V    E  K  + LN+ + +KI +A   E+  L+ E++ 
Sbjct: 242 FSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGL-EVNTLSAEEQA 300

Query: 298 LWREAMRPVWQKFEGEIGADLIKA 321
             RE    V++K + EIGA+++ A
Sbjct: 301 RIREKSMVVYEKHKAEIGAEVVDA 324