Pairwise Alignments

Query, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

Subject, 426 a.a., TRAP transporter large permease from Pseudomonas sp. BP01

 Score =  319 bits (817), Expect = 1e-91
 Identities = 173/420 (41%), Positives = 262/420 (62%), Gaps = 6/420 (1%)

Query: 7   FLLLFVFM---FLGVPIAISLGLSGAVSILMFSQDSVSSLAIKLFETSDAYTFLAIPFFL 63
           F+LL  F+    LG+P+A +LGLS  +    +    + ++ I++    + ++ LAIPFF+
Sbjct: 4   FILLGSFIALILLGMPVAYALGLSALIGA-WWIDIPLQAMMIQVASGVNKFSLLAIPFFV 62

Query: 64  LSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAV 123
           L+GA M  GG+++RL+ FA   VG +RGGL++  ++A   F A+SGSS A  A+VGS+ +
Sbjct: 63  LAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLI 122

Query: 124 AGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAAT--ETSVGKLFMAGVIPGLLL 181
             M R GYP+ F   +  +     +L PPS   V+YS A     S+  LFMAGV+PGLLL
Sbjct: 123 PEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGVMPGLLL 182

Query: 182 GLMLMIAIYIVARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILGGIYSGMFTPTEAA 241
             ++M    I A+ +  P       R+ L  A  A WGL+ +VIILGGI SG+FT TE+A
Sbjct: 183 SAVMMGLCLIFAKKRNYPKGEVIPLRQALKIAGEALWGLMAMVIILGGILSGVFTATESA 242

Query: 242 AVAAVYSAFVALFIYKDMQLRDCPKVLLESGRLAIMLMFIIANAMLFAHVLTTEQIPQEI 301
           AVA V+S FV +FIY+D + RD PK++  + R   ++M +I  A  F +V+T  QIP +I
Sbjct: 243 AVAVVWSFFVTMFIYRDYKWRDLPKLMHRTVRTISIVMILIGFAASFGYVMTLMQIPSKI 302

Query: 302 TAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVM 361
           T   L+        L+ +N +LL+ G+ M+ + ++LIL PI  P+   +G+DP+H G++M
Sbjct: 303 TTAFLTLSDNRYVILMCINFMLLLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIM 362

Query: 362 VVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIRAALPWLMILLVFLIMVTYLPFISLALP 421
           +VN+ IGL+ PPVG  LFV SA+  +++  T++A LP+ + L + L+ VTY+P ISL LP
Sbjct: 363 LVNLGIGLITPPVGAVLFVGSAIGKVSIESTVKALLPFYLALFLVLMAVTYIPAISLWLP 422



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 132 PKAFGAGIICNAGTLGILIPP-SIVMVVYSAATETSVGKLFMAGVIPGLLLGLMLMIAIY 190
           P  FG  ++ N G +G++ PP   V+ V SA  + S+     A +   L L L+LM   Y
Sbjct: 355 PVHFGMIMLVNLG-IGLITPPVGAVLFVGSAIGKVSIESTVKALLPFYLALFLVLMAVTY 413

Query: 191 IVARIKKLPA 200
           I A    LP+
Sbjct: 414 IPAISLWLPS 423