Pairwise Alignments

Query, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  303 bits (777), Expect = 5e-87
 Identities = 162/430 (37%), Positives = 260/430 (60%), Gaps = 9/430 (2%)

Query: 1   MAVLCLFLLLFVFMFLGVPIAISLGLSGAVSILMFSQDSVSSL-----AIKLFETSDAYT 55
           M  L LF  + +   L  P+A++LG +   ++L         L       +L+  +D++ 
Sbjct: 1   MVGLILFGGMVLLFALNAPVAVALGGAAFAAVLAKGLTMPVGLEPMLAVQRLYAGADSFP 60

Query: 56  FLAIPFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATV 115
            LA+P F+L+G  M+ GG+++R++  A+A VGH+ GGLA  +V++ M FA +SGS+ A  
Sbjct: 61  LLAVPLFMLAGELMSAGGISRRIVALADALVGHLPGGLAAVSVVSAMFFAGVSGSAAADT 120

Query: 116 AAVGSIAVAGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATETSVGKLFMAGV 175
           AAVGSI +  M+R GYP      +    G +G++IPPSI M+V+ A T  S+G+LF  GV
Sbjct: 121 AAVGSILIPAMIRRGYPAPLAGAVQAAGGCIGVIIPPSIPMIVFGALTGASIGRLFAGGV 180

Query: 176 IPGLLLGLMLMIAIYIVARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILGGIYSGMF 235
           +PGLL+G  L+    + AR      + R   R    + R   W L    IILG I  G+ 
Sbjct: 181 LPGLLMGASLVALCVVEARRTGRVPERRFDARALWPAIRSGAWALGAPAIILGTIIGGVA 240

Query: 236 TPTEAAAVAAVYSAFVALFIYKDMQLRDCPKVLLESGRLAIMLMFIIANAMLFAHVLTTE 295
           T TE+AA+A  Y+  V L+ +++++ RD P++ L +G  + ++M IIA A LF  V+  E
Sbjct: 241 TATESAAMAVAYALPVGLYAHRELRWRDLPRLALCAGVTSAVVMLIIAAASLFGWVMALE 300

Query: 296 QIPQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAMKLGIDPI 355
           ++PQ I AW+LS     I  L++VN++LL+ G+F+E +A +L+  P+  P+   LGID +
Sbjct: 301 RLPQAIAAWMLSLSGDRIVLLLLVNLLLLVVGAFLETTAAILLFVPVLVPLLPALGIDLV 360

Query: 356 HLGIVMVVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIRAALPWLMILLVFLIMVTYLPF 415
           HLG+++VVN+ IG++ PP+G+ L V+ ++  + L    RA +P L++L+V L++VT+ P 
Sbjct: 361 HLGVIVVVNLAIGMLTPPLGVCLVVSCSIARIPLSAISRAIVPMLVVLIVDLLLVTFFPP 420

Query: 416 ISLALPHWLG 425
           + L    WLG
Sbjct: 421 LVL----WLG 426