Pairwise Alignments

Query, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  265 bits (677), Expect = 5e-75
 Identities = 202/653 (30%), Positives = 314/653 (48%), Gaps = 39/653 (5%)

Query: 1   MKIKNKLVLAFVSVAFIPVSLVAVISVMNARTEAVDQFIDGSTREIRQIDGNIRQFFDGT 60
           MK  +K+V A   +    V+L++       R E +   +  S  EI  +DG  +      
Sbjct: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDE-IRSMVSDSVDEI--VDGVSK------ 51

Query: 61  LQNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAAAILSIGL 120
                   T  V     ++  Y  +   + P P   +T+I +            ++  GL
Sbjct: 52  -------TTAEVINGRKSIAQYATSLIENNPEPDNVRTIISQ----PLIKNTFLLVGFGL 100

Query: 121 E-DGTYAK----WPDDPQLAKYDPRTRPWYKAAMASPGKTVRTPAYYYDKDDVALVGTAR 175
           E DG+       W   P    +DPR RPWYK A  + GK V T  Y        LV  A 
Sbjct: 101 EKDGSNINNDPSWNPGPT---WDPRVRPWYKDAK-NAGKLVITAPYADSASGEILVSVAT 156

Query: 176 ALLEN--GKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLV-EDGVVLVDPRNAAHNFKP 232
            + ++  G+  G     VSL  L ELV  +KL ++GYV +V EDG  +  P+    N KP
Sbjct: 157 PVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKE-FNGKP 215

Query: 233 LKGLGAAYAQLAETPQGSTDVVIDGVHYMANVWTSPGLGWRYIGLIEHREVMAEATRMTY 292
           +           +T Q    V+I+G  Y  +     G  W Y+G++   E+   A     
Sbjct: 216 MSEFLGESKINVDTHQ----VIINGKPYAVSFSDVEGEDW-YVGVVIDEEIAYAALDELR 270

Query: 293 LTALIVGVLVLIFGLIAAAFS-KVIVKPIGQVSTGLQSIAQGEGDLRHELQVQGKDETAE 351
            + LI  V+ L+  +    F  +V++KP+  ++  +Q++A GEGDL   L     +E A+
Sbjct: 271 RSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAK 330

Query: 352 LAGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNE 411
           LA  FN F   +++ +    A  A +   S+  S       EA   Q   +E ++TA +E
Sbjct: 331 LAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHE 390

Query: 412 MVATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAG 471
           M  T+++VA +  GAA +A+      A G   +  TT  ++ L   +  +   +  LE+ 
Sbjct: 391 MATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESA 450

Query: 472 SRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEI 531
           + +I  +L  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+RT  ST EI
Sbjct: 451 TANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEI 510

Query: 532 EQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAA 591
             ++  L++    V   M    D + ++V+  + A ++ E I+ ++ +I D N+QI++AA
Sbjct: 511 RNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAA 570

Query: 592 EEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFK 644
           EEQ  VAEEIN +  +I D +  V   A+ A       +    E + ++ +FK
Sbjct: 571 EEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623