Pairwise Alignments

Query, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (701), Expect = 8e-78
 Identities = 193/582 (33%), Positives = 298/582 (51%), Gaps = 34/582 (5%)

Query: 62  QNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVI-------ERFARYGATHP--A 112
           + ++ +  DS+   V  +KN   +D AS+   A++ T I       + FA+     P   
Sbjct: 32  EEIESLVQDSLMEMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFAKSVLESPNLK 91

Query: 113 AAILSIGL---EDGTYAKWPD--DPQLAKYDPRTRPWYKAAMASPGKTVRTPAYYYDKDD 167
            + L+IGL    D T  +  D  +P  A YDPR RPWY  A     K V T  Y      
Sbjct: 92  GSFLAIGLGYESDATVVENDDGWEPN-ADYDPRKRPWYVDAKRER-KLVVTEPYVDISTK 149

Query: 168 VALVGTARALLENGKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLV-EDGVVLVDPRNA 226
             ++     + +     G     V L  L +LV S+ L ++GY+ +  +DGV +  P NA
Sbjct: 150 KIIISIGTPVYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHP-NA 208

Query: 227 AHNFKPLKGLGAAYAQL---AETPQGSTDVVIDGVHYMANVWTSPGLGWRYIGLIEHREV 283
            +N       G  ++Q     +  +G+  + +DG +Y+      P   W YIG +    +
Sbjct: 209 ENN-------GEKFSQFLPNVDLKEGTQRIELDGKYYLVKFAQVPSESW-YIGAVVDESI 260

Query: 284 ---MAEATRMTYLTALIVGVLVLIFGLIAAAFSKVIVKPIGQVSTGLQSIAQGEGDLRHE 340
              M +  R + L   ++GVL+ I GL  +   KV++KP+G +S  ++ +A G+GDL   
Sbjct: 261 AFAMVDDLRHSSLIYTVIGVLLSIIGL--SFLIKVLMKPLGALSRAIEDVASGQGDLTKR 318

Query: 341 LQVQGKDETAELAGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQRE 400
           L      E A LA  FN F   +++ IQH+    A + + ++     AH    A  +Q +
Sbjct: 319 LDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQ 378

Query: 401 AVELVSTAFNEMVATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTE 460
            +E ++TA +EM  TA EVA +  GAA +A        +G + +  TT +++ L  R+ +
Sbjct: 379 ELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQ 438

Query: 461 SSQAMVELEAGSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRAL 520
           + + +  LE  + +I  IL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR L
Sbjct: 439 AVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 498

Query: 521 AKRTSDSTGEIEQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEI 580
           A+RT  ST EI  ++  L++    V+  M      +  +V   + A +S + I+ ++  I
Sbjct: 499 AQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRI 558

Query: 581 RDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSA 622
            D N+QI++AAEEQ  VAEEIN +  +I D +  V   A SA
Sbjct: 559 SDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSA 600