Pairwise Alignments

Query, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  252 bits (643), Expect = 4e-71
 Identities = 184/651 (28%), Positives = 314/651 (48%), Gaps = 35/651 (5%)

Query: 1   MKIKNKLVLAFVSVAFIPVSLVAVISVMNARTEAVDQFIDGSTREIRQIDGN-IRQFFDG 59
           +K ++K++LA   V  +  +L  + +    R + ++Q ++ S  +  Q+  + ++ +  G
Sbjct: 3   LKFRHKILLAAAGVVVLAFALFTLYNDYLQR-KTINQNLESSVGQAGQLTASSVQNWLSG 61

Query: 60  TLQNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAAAILSIG 119
            +  ++ +  +  +  VN+  +   + +A          ++  F              +G
Sbjct: 62  RILVLENLTQNVAFQGVNSDLSGLVSQSA----------LVSTFQ----------FTYVG 101

Query: 120 LEDGTYAKWPDDPQLAKYDPRTRPWYKAAMASPGKTVRTPAYYYDKDDVALVGTARALLE 179
              GT+ + P+    A YDPR RPWYK+ + + GKT+ +  Y      + +V  A  +  
Sbjct: 102 DSKGTFTQRPNVDMPAGYDPRQRPWYKSTVDA-GKTILSAPYLASVGGL-VVTIASPVKA 159

Query: 180 NGKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLVE-DGVVLVDPRNAAHNFKPLKGLGA 238
            G+  GV    +SL  L +++ S++ G  GY  LV  DG ++V P       + +K L  
Sbjct: 160 AGQVTGVVGGDLSLDTLVKIINSVEFGGLGYAFLVSGDGQIIVSPDKE----QVMKNLKD 215

Query: 239 AY-AQLAETPQGSTDVVIDGVHYMANVWTSPGL---GWRYIGL-IEHREVMAEATRMTYL 293
            Y  Q         +V ++G   + +     GL    W YIGL I+  +  A  ++    
Sbjct: 216 IYPGQTISLDARLREVTLNGQQRLLSFTPITGLPSADW-YIGLSIDKDKAYAPLSQFRSS 274

Query: 294 TALIVGVLVLIFGLIAAAFSKVIVKPIGQVSTGLQSIAQGEGDLRHELQVQGKDETAELA 353
             + V + V +  L+ +   + +++P+  +   +Q IAQGEGDL   L +QGKDE A L 
Sbjct: 275 AMVAVLIAVAVIALLLSLLIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALG 334

Query: 354 GWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNEMV 413
           G FN+F+  +   I  + +A+  + + S+     +++       Q      V+ A NE+ 
Sbjct: 335 GSFNQFVERVHASIVEVSSATLQVHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELG 394

Query: 414 ATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAGSR 473
           A   E+AR+ S A+  A     +  +G+  +E T   ++ L  ++++S   + +L A + 
Sbjct: 395 AATQEIARNASDASIQASEARNQAEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTE 454

Query: 474 SINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIEQ 533
           +I  IL  I+ I++QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RT  S  EI +
Sbjct: 455 NIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHK 514

Query: 534 LLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAAEE 593
           ++G+L++ +Q     M      S+ SV     A      +   + +I   N  ++AA EE
Sbjct: 515 MIGSLQSGSQHAVLNMNESQTSSQESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEE 574

Query: 594 QHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFK 644
           Q +V E +N  I QI    +   +  N    D   LS  +  L  LV  FK
Sbjct: 575 QTAVVETLNIDINQINTLNQQGVANLNETLKDCAALSQQAGRLKQLVDSFK 625