Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  605 bits (1559), Expect = e-177
 Identities = 316/522 (60%), Positives = 391/522 (74%), Gaps = 1/522 (0%)

Query: 1   MRNNQPVTQREISLAPSQKLISATDVRGVITYCNDAFVDISGFERADLIGAPQNIVRHPD 60
           MRNNQPVTQRE +    Q+L+S TD++G ITYCN+ FV++SGF+R +LI AP N+VRHPD
Sbjct: 1   MRNNQPVTQREYAFPDQQRLVSTTDLKGQITYCNNIFVEVSGFDRDELIRAPHNLVRHPD 60

Query: 61  VPPAVFAHMWGALKQGLPWMGIVKNRSKNGDHYWVNAYVTPIFDGSK-VVGFESVRVKPT 119
           VPPAVF HMW  LKQG PWMGIVKNR K GDHYWVNAYVTPI D  + V G+ESVR KPT
Sbjct: 61  VPPAVFDHMWTTLKQGKPWMGIVKNRRKTGDHYWVNAYVTPILDQQRQVTGYESVRTKPT 120

Query: 120 ADEIRRAQALYRRISQGKPGVPRQDAWLPAAINCVPYVATGLTGSLAGMFLSAPVAIAVA 179
            ++++RA+ALY RI+ GK GVP+ D WLP     +P++     G L G      +    A
Sbjct: 121 REQVQRAEALYERINSGKSGVPQSDRWLPVLSKWLPFLIISQLGFLVGAGFDHALGFIAA 180

Query: 180 VAVAVPVGVLCSRWRQGSTLRLLHGVEPSTSDALIAQMYSDARGPQARLETAFLSQNARL 239
            A+AVP+G+   +W+Q    RLL     +TSD LIA+MY+D+RG +A+LE A LSQ A L
Sbjct: 181 AALAVPLGLAGLQWQQRGLKRLLQLASQTTSDPLIARMYTDSRGVEAQLEMAMLSQQAHL 240

Query: 240 KTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQMAATTQEVASHV 299
           KTCLTRLQD+A QL   A Q+D LA + + GL +Q  ETEQV+ A+N+MAATTQEVAS+V
Sbjct: 241 KTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATTQEVASNV 300

Query: 300 QRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVDVIK 359
              A+AT++A+ LT  GREV  +TR+AI++L+  V+ TG  V QLA DS+ IG VVDVIK
Sbjct: 301 ALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDSDAIGGVVDVIK 360

Query: 360 GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIHGLITQLQASSN 419
            IADQTNLLALNAAIEAARAG+ GRGFAVVADEVRQLAQRT+++T +IH LI +LQ  + 
Sbjct: 361 SIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIEKLQLQAR 420

Query: 420 NAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATEEQSAVAEEISR 479
           +AVQ+ E G+ QA  GV  V +ADQAL GI+EA+ +I DMTTQIA+ATEEQSAVA+EIS 
Sbjct: 421 HAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSAVADEISN 480

Query: 480 NITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVERFNR 521
           N++TIA LADQTS  A  S  LS++L  TA  QYALVERFNR
Sbjct: 481 NVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERFNR 522