Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  256 bits (655), Expect = 1e-72
 Identities = 169/520 (32%), Positives = 272/520 (52%), Gaps = 14/520 (2%)

Query: 6   PVTQREISLAPSQKLISATDVRGVITYCNDAFVDISGFERADLIGAPQNIVRHPDVPPAV 65
           P  Q+E+ +    +L+S TD++GVITYCND F  I+GF+  +L+G   NIVRH  +P A 
Sbjct: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81

Query: 66  FAHMWGALKQGLPWMGIVKNRSKNGDHYWVNAYVTPIFDGSKVVGFESVRVKPTADEIRR 125
           FA MW  LKQG  W GIVKNR+K+G  YWV+AYVTPI+   ++ G++SVRVK     +  
Sbjct: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141

Query: 126 AQALYRRISQGKPGVPRQDAWLPAAINCVPYVATGLTGSLAGMFLSAPVAIAVAVAVAVP 185
           A   Y+ +   +    +    L  ++     +   ++ +LA  F  AP      +A  +P
Sbjct: 142 ATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGF-QAPEQWQ-WLASLLP 199

Query: 186 VGVLCSRWRQGSTLRLLHGVE--PSTSDALIAQMYSDARGPQARLETAFLSQNARLKTCL 243
            GVL   +RQ   +R    ++   +  D++   +YS A       +      +AR++T L
Sbjct: 200 AGVLGLLFRQ-ELVRTPQQLKQWQNEYDSISRLIYSGADAFSV-ADYHLKMASARIRTIL 257

Query: 244 TRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQMAATTQEVASHVQRTA 303
            R+ DSA  L  LA Q         + L  Q    + V+ A + + +  + V+SH     
Sbjct: 258 GRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAH 317

Query: 304 DATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVDVIKGIAD 363
               Q        +     T + ++RL+       +T  +L+  + ++G ++  I GIA+
Sbjct: 318 QLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAE 377

Query: 364 QTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQST----TQIHGLITQLQASSN 419
           QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT ++T    T I  +++ ++A   
Sbjct: 378 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRG 437

Query: 420 NAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATEEQSAVAEEISR 479
           +   S +  ++ AQ+    +    Q L  +   +S +  +  ++A+A + Q  +  E+++
Sbjct: 438 DITASRDQTEQCAQDANTTL----QQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQ 493

Query: 480 NITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVERF 519
           +I +IA +A Q S   H    L+  ++   +   AL ++F
Sbjct: 494 HIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533