Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  285 bits (729), Expect = 3e-81
 Identities = 178/524 (33%), Positives = 277/524 (52%), Gaps = 11/524 (2%)

Query: 1   MRNNQPVTQREISLAPSQKLISATDVRGVITYCNDAFVDISGFERADLIGAPQNIVRHPD 60
           MRNNQPV   E+ L     L+S TD++G I Y N+ F  I GF   +L+  P NIVRHPD
Sbjct: 1   MRNNQPVIDNEVVLTDDDILLSTTDLKGNIGYANEDFCRICGFSEEELVRQPHNIVRHPD 60

Query: 61  VPPAVFAHMWGALKQGLPWMGIVKNRSKNGDHYWVNAYVTPIFDGSKVVGFESVRVKPTA 120
           +P A FA +W  L Q   W+G+VKNR K+G +YWVNAYV P+ +  +V  ++SVR + + 
Sbjct: 61  MPKAAFAILWQRLAQKQSWLGVVKNRCKDGSYYWVNAYVAPVMENGQVKEYQSVRRRASQ 120

Query: 121 DEIRRAQALYRRISQGKPGVPRQDAWLPAAINCVPYVATGLTGSLAGMFLSAPVAIAVAV 180
            ++ RA  +Y+ +++ +     +DA L        +    L  ++    +S  +A+  A 
Sbjct: 121 AQVERASDIYQSLNKSEQRSEIKDAKLGYGGKLTLFAVLCLLLAIGLSNISPWLALICAP 180

Query: 181 AVAVPVGVLCSRWRQGSTLRLLHGVEPSTSDALIAQMYSDARGPQARLETAFLSQNARLK 240
            +A+ + +L +  R  +   L        SD +   +Y+  R     ++ A     A + 
Sbjct: 181 LLAIGMRLLLAPLRALNDQALT-----IVSDPVARHIYAGRRDELGNIQFAMEFTTAEIA 235

Query: 241 TCLTRLQDSAEQLSALAGQSDQLASASSKGLDR---QRVETEQVSAAVNQMAATTQEVAS 297
             + R+ D++   S +A  SD L  + +   DR   Q  +T Q +AAV ++ A+  E+  
Sbjct: 236 GVVGRMTDAS---SVIARDSDALLGSITATADRADGQNQQTAQAAAAVEELTASFNELGQ 292

Query: 298 HVQRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVDV 357
            +++ +   + +     +G E       +I+ L   V      V+++  DS  I  V++V
Sbjct: 293 QLKQVSADVEASQAAVLQGYEQLDAVVASIDELHNEVGNFAQVVSEIEHDSVAINQVLEV 352

Query: 358 IKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIHGLITQLQAS 417
           I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRQL+ RT+ ST+QI  +I + Q S
Sbjct: 353 ITKIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSARTADSTSQIDAIIAKFQQS 412

Query: 418 SNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATEEQSAVAEEI 477
           + NA  ++  GQRQA + V  V +A+     +   +  I  MT   A A +EQ   A +I
Sbjct: 413 TANAANTLTAGQRQATQAVQLVKQAEAVFAELVTRIDKINQMTELSADAMQEQGLAAVDI 472

Query: 478 SRNITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVERFNR 521
           S ++  I+ELA +   Q+     L +  +  +     L  +F R
Sbjct: 473 SDSLQAISELASEGFAQSQADRQLGERSSLKSMESRQLARQFWR 516