Pairwise Alignments

Query, 497 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (453), Expect = 3e-49
 Identities = 112/314 (35%), Positives = 169/314 (53%), Gaps = 2/314 (0%)

Query: 180 EKMLSVTTQISAQTA-QGEGKVHM-SLAKRFDHFLQQITHLIDGVARDSHGLGQLGQELA 237
           ++M S    +S +T  + +G   +  + K F+ F+ ++ H I+ VA +S  L  +   ++
Sbjct: 229 DRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVS 288

Query: 238 SASGTLEKGARHQLAEITQMTGSMQRMEDAMGHIAVHVEQAVDHAGKASQQILRGQESVG 297
             +   +     Q     Q+  ++  +   +  IA +   A D A +A+     G++ VG
Sbjct: 289 QRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVG 348

Query: 298 RAQQEITQLASRLNGTHETVQGLAVQAEQIGTVLDVISGIANQTNLLALNAAIEAARAGE 357
             Q  I  L + L+   + V  LA Q   I + LD I  I+ QTNLLALNAAIEAARAGE
Sbjct: 349 EVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGE 408

Query: 358 QGRGFAVVADEVRNLAQRTAVSTQEIKTIIESLQHGSRQAVEAMHDSRQGVDRCVEDSQV 417
           QGRGFAVVADEVR LA R+A ST+EI+ +I  LQ  S +AVEAM   R   D  VE S  
Sbjct: 409 QGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAK 468

Query: 418 AVDMLRAVGSDIAQIDDLNGRIVTTTREQTEANLEIVGRLQSVQSIAQSTANDVETLARS 477
           A   L  + S I QI+D N ++ T T EQ+    +I   ++ +  +   T++  + L+R+
Sbjct: 469 ANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRA 528

Query: 478 SEQLPPIAVRLDAL 491
           S  L  ++ +LD L
Sbjct: 529 SASLQRLSSQLDKL 542