Pairwise Alignments

Query, 497 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  174 bits (440), Expect = 9e-48
 Identities = 108/293 (36%), Positives = 157/293 (53%)

Query: 203 SLAKRFDHFLQQITHLIDGVARDSHGLGQLGQELASASGTLEKGARHQLAEITQMTGSMQ 262
           +LA   +   Q +  LID +      L    +E+   S     G + Q  +ITQ+  +M 
Sbjct: 248 TLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMA 307

Query: 263 RMEDAMGHIAVHVEQAVDHAGKASQQILRGQESVGRAQQEITQLASRLNGTHETVQGLAV 322
           +M+ A+  +A + E +   A  A+ +   G        + I Q+A  +    +TV  L  
Sbjct: 308 QMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQ 367

Query: 323 QAEQIGTVLDVISGIANQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQRTAVSTQE 382
           Q+ QI  V+DVI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  ST E
Sbjct: 368 QSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGE 427

Query: 383 IKTIIESLQHGSRQAVEAMHDSRQGVDRCVEDSQVAVDMLRAVGSDIAQIDDLNGRIVTT 442
           I TIIE LQ  ++QA +A   SR  +D+CVE    +  ++ ++   IA I D+  +I + 
Sbjct: 428 ITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASA 487

Query: 443 TREQTEANLEIVGRLQSVQSIAQSTANDVETLARSSEQLPPIAVRLDALGRRF 495
             EQ     E+   ++++   +Q  A   +  A++  +L  +AV L    RRF
Sbjct: 488 CSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRF 540



 Score = 24.6 bits (52), Expect = 0.009
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 167 HSQAEAVESQEMLEKMLSVTTQISAQTAQGEGKVHMSLAKRFDHFLQQITHLIDGVARDS 226
           HSQ+  +  +E +  +  V TQI++  ++ +     S+A      ++ I      VA+ S
Sbjct: 462 HSQSLMISIEESIANIADVGTQIASACSEQD-----SVADELSRNVENIHLASQEVAQGS 516

Query: 227 HGLGQLGQELASASGTLEKGAR 248
               Q  +EL   + +L+   R
Sbjct: 517 QQTAQACRELTQLAVSLQDTLR 538