Pairwise Alignments

Query, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  219 bits (559), Expect = 2e-61
 Identities = 149/530 (28%), Positives = 258/530 (48%), Gaps = 20/530 (3%)

Query: 136 WNSDPAPNYYDQSWYKGGLASPRGQCAWAAAYKDDASQEPRTNCAMAIQRDGVPYGVATI 195
           WN  P  +   + WYK   A   G+    A Y D AS E   + A  ++       + +I
Sbjct: 113 WNPGPTWDPRVRPWYKD--AKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSI 170

Query: 196 --DVTLGFFNDLVASKEKDIGGQMLIVEGDGKIISNSTRISSPVVLKNISELTGTSAFAA 253
             DV+L    +LV   +    G + IV  DG  I++  +  +    K +SE  G S    
Sbjct: 171 FYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNG---KPMSEFLGESKINV 227

Query: 254 QVSKALAQRDQALQRSEFDNQGVASTFYMRPIAGTPWFLATALPTALITAQRDDVLGTLA 313
              + +               G         + G  W++   +   +  A  D++  +  
Sbjct: 228 DTHQVIIN-------------GKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTL 274

Query: 314 LLQIPMVLLLVLLAVYAIRQLVQRMKSLKTNIDALSTGDADLTRRITIRAEDELGAIGHS 373
           +  +  +++ V + ++ +R L++ + +L   I  +++G+ DLT+R++   ++E   +   
Sbjct: 275 IFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIG 334

Query: 374 VNRFIVYLQNMIGEVTQATGAMSSSLEQLQRTSAHTNQILVRHASETDQTVTAITEMSST 433
            N F   LQ  + +       +    E    T   + + +     E +Q  TA+ EM++T
Sbjct: 335 FNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATT 394

Query: 434 ADTVAQNAAETAAFTQRANEHADRSRVVVGEASNSVSALIGEVSSATHSVENMRQDAARI 493
           +  VA NA   A+  + A++ A     VV + + ++  L   + +A   V+ +    A I
Sbjct: 395 SSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANI 454

Query: 494 TETLGVIGAIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTSQINEML 553
              L VI  IA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST++I  M+
Sbjct: 455 ETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 514

Query: 554 TRLTAGVSSSVAAMENTQASCQSAADATARVNTGLDEMAGSVSHINNLSTQIATAAEQQS 613
            +L +G ++   AM +++ +  SA +     N  L+++  ++  I++++ QIA+AAE+QS
Sbjct: 515 EKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQS 574

Query: 614 AVTEEINRSMVQIRQMVEELVQSGHATETNTQSLLDANGRVIALMGRFKV 663
            V EEIN + V+I+ + +++ +S      + Q   +      A++ +FKV
Sbjct: 575 LVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624