Pairwise Alignments

Query, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  309 bits (792), Expect = 2e-88
 Identities = 191/461 (41%), Positives = 277/461 (60%), Gaps = 18/461 (3%)

Query: 215 GQMLIVEGDGKIISNSTRISSPVVLKNISELTGTSAFAAQVSKALAQRDQALQRSEFDNQ 274
           G   + + DGKI+++S       +  N ++        A    AL   D      E    
Sbjct: 233 GHFWVQDSDGKILAHSQSSQIGRITPNAAKAKQALGNQADAFVALPVTDPKTHSQE---- 288

Query: 275 GVASTFYMRPIAGT-PWFLATALPTALITA-QRDDVLGTLALLQ--------IPMVLLLV 324
                 Y+R I     W + T    + I+A ++    GT A+ +        I  +L+++
Sbjct: 289 --TQIAYVRKILPEWGWVIGTGTYESNISAIEQRLTAGTEAIFKQKIYRSIAIASLLIII 346

Query: 325 LLA--VYAIRQLVQRMKSLKTNIDALSTGDADLTRRITIRAEDELGAIGHSVNRFIVYLQ 382
            LA  V+ + +++  M  LK  ID LSTGDADLT R+ I ++DEL AIGHSVN FI YLQ
Sbjct: 347 ALAFCVFLLNKIIADMVMLKNRIDTLSTGDADLTSRLAITSKDELAAIGHSVNSFIGYLQ 406

Query: 383 NMIGEVTQATGAMSSSLEQLQRTSAHTNQILVRHASETDQTVTAITEMSSTADTVAQNAA 442
            M+ E++ A+  ++  + QL   S +  Q L +H+SET+  VTAI++M+++AD VAQ+A 
Sbjct: 407 AMMLEISHASQKITQGIGQLDSHSENNRQALSKHSSETELVVTAISQMNASADAVAQSAG 466

Query: 443 ETAAFTQRANEHADRSRVVVGEASNSVSALIGEVSSATHSVENMRQDAARITETLGVIGA 502
           + AA T +ANE A  S + V +A+ SV AL  E++SA+ S+  M ++  +I   LGVI  
Sbjct: 467 KMAASTHQANEEAKTSTLTVSDAAGSVQALANEMNSASQSIHTMSENTNQIISVLGVIKE 526

Query: 503 IAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTSQINEMLTRLTAGVSS 562
           IA QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+RTQ+ T+QI ++LT L     +
Sbjct: 527 IADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSCTTQIEQILTTLRRDADT 586

Query: 563 SVAAMENTQASCQSAADATARVNTGLDEMAGSVSHINNLSTQIATAAEQQSAVTEEINRS 622
           +   M  TQ SCQ     TARV + L  +  S++ +N+L  QIA+A+EQQS VT EI+++
Sbjct: 587 AEQLMLETQNSCQQVTQNTARVTSNLGAVTDSIAELNDLGGQIASASEQQSVVTAEISQN 646

Query: 623 MVQIRQMVEELVQSGHATETNTQSLLDANGRVIALMGRFKV 663
           M  I  M + L+Q+G  T  +TQSL  AN ++ A++ +FK+
Sbjct: 647 MHTIEAMAQTLLQNGQQTLESTQSLSAANQQLSAMVRKFKL 687