Pairwise Alignments

Query, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  310 bits (795), Expect = 8e-89
 Identities = 178/364 (48%), Positives = 244/364 (67%), Gaps = 6/364 (1%)

Query: 304 QRDDVLGTLALLQIPMVLLLV----LLAVYAIRQLVQRMKSLKTNIDALSTGDADLTRRI 359
           Q +D +     L + ++L+ +    L A++  R+LV  +  +K  ++ L+  D DLT++ 
Sbjct: 166 QAEDKVNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRVVEHLA--DGDLTQKT 223

Query: 360 TIRAEDELGAIGHSVNRFIVYLQNMIGEVTQATGAMSSSLEQLQRTSAHTNQILVRHASE 419
            I  ++EL A+G  ++R I +L++MI ++ QA+  MS  + QL   S      L  HA E
Sbjct: 224 QISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVE 283

Query: 420 TDQTVTAITEMSSTADTVAQNAAETAAFTQRANEHADRSRVVVGEASNSVSALIGEVSSA 479
           TDQ VTA+TEMS+TA  VA +AA  A FTQ+ANE AD+S+  V +A+N+V AL+G+V +A
Sbjct: 284 TDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTA 343

Query: 480 THSVENMRQDAARITETLGVIGAIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 539
            H++  M ++   I   L VIG IA QTNLLALNAAIEAARAGEQGRGFAVVADEVRALA
Sbjct: 344 AHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 403

Query: 540 ARTQASTSQINEMLTRLTAGVSSSVAAMENTQASCQSAADATARVNTGLDEMAGSVSHIN 599
           ARTQAST++IN+ML RL  G +S+V AM+ T+ SCQ AAD T  V   L+ +   V  IN
Sbjct: 404 ARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDIN 463

Query: 600 NLSTQIATAAEQQSAVTEEINRSMVQIRQMVEELVQSGHATETNTQSLLDANGRVIALMG 659
            LS QIATAAE+QSAV+EEINR++  IR+MVEEL QSG AT  +  SL     ++  ++ 
Sbjct: 464 GLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKEQLTGVVS 523

Query: 660 RFKV 663
            F++
Sbjct: 524 HFRL 527