Pairwise Alignments

Query, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  214 bits (546), Expect = 7e-60
 Identities = 178/669 (26%), Positives = 307/669 (45%), Gaps = 48/669 (7%)

Query: 4   LRSIQARYTLFLVLFVLVLFVLTVVGIGQLVAPTLRHTEEQVVLNRIAEVAEQIQGELNK 63
           +RS      LF  LF +++ V  +V I       +R+   +   + I ++A      +  
Sbjct: 1   MRSTLKTRLLFSSLFAVLITVAVLVSISSYF---IRNNALENTQHEIDQLANTFAEGIGL 57

Query: 64  -VQSQQRSITQTVPLLDSDAIDKVLPGLVDQYGELKVFGGGIWPLPNQRTPGRNKHSTFW 122
            +Q ++ +IT     +++D   ++ P L+  +      G G               +  +
Sbjct: 58  WMQDRKMAITSLKKTIEADPSVQITPYLLQAHN-----GMGF--------------ALTY 98

Query: 123 HRDASGKLAVNTFWNSDPAPNY--YD---QSWYKGGLASPRGQCAWAAAYKDDASQEPRT 177
             D  G +     +  DPA N   YD   + WY    A+        A Y     ++   
Sbjct: 99  FGDEQGNM-----YRQDPALNVANYDPRIRPWYMDAKAA--NAIVMTAPYVSATLKKQVV 151

Query: 178 NCAMAIQRDGVPYGVATIDVTLGFFNDLVASKEKDIGGQMLIVEGDGKIISNSTRISSPV 237
             A  +   G  +GVA  ++T+    D V   +    G  ++V+  G IIS+     +  
Sbjct: 152 TIAEPVTVSGSLFGVAAANLTIDQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNE 211

Query: 238 VLKNISELTGTSAFAAQVSKALAQRDQALQRSEFDNQGVASTFYMRPIAGTPWFLATALP 297
            L  I      S         L+QR  A    E +  G     Y+  +  T W L   + 
Sbjct: 212 QLNKIDNSFTPSW--------LSQRANANTLEERELDGETQLIYVAAVPSTDWELVFVMN 263

Query: 298 TALITAQRDDVLGTLALLQIPMVLL--LVLLAVYAIRQLVQRMKSLKTNIDALSTGDADL 355
              I +Q   +   ++ +   ++++  LVL+A++ I+   + ++ +   ++ ++ GD DL
Sbjct: 264 KDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQ--FKDLERVALALNDIAEGDGDL 321

Query: 356 TRRI-TIRAEDELGAIGHSVNRFIVYLQNMIGEVTQATGAMSSSLEQLQRTSAHTNQILV 414
           T RI T  + DE+G +    NRF+  L  MI  + +  G +    +    ++   +Q + 
Sbjct: 322 TVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIA 381

Query: 415 RHASETDQTVTAITEMSSTADTVAQNAAETAAFTQRANEHADRSRVVVGEASNSVSALIG 474
               E     TA+TEM+S  + +A NA  TA   Q A   ++  +  V ++  S+  L  
Sbjct: 382 VQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLAN 441

Query: 475 EVSSATHSVENMRQDAARITETLGVIGAIAGQTNLLALNAAIEAARAGEQGRGFAVVADE 534
           EV +A   +  + + + +I   L  I  IA QTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 442 EVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 501

Query: 535 VRALAARTQASTSQINEMLTRLTAGVSSSVAAMENTQASCQSAADATARVNTGLDEMAGS 594
           VR L+ RT +ST +I  M+  L      +V +M  +    +++       +  L +++ +
Sbjct: 502 VRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKA 561

Query: 595 VSHINNLSTQIATAAEQQSAVTEEINRSMVQIRQMVEELVQSGHATETNTQSLLDANGRV 654
           ++ I+++++QIATAAE+Q++VT EINR+   IR++ E L     ++    Q L      +
Sbjct: 562 INEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASL 621

Query: 655 IALMGRFKV 663
              +GRFK+
Sbjct: 622 QQEVGRFKL 630