Pairwise Alignments

Query, 399 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 659 a.a., nitrate transport ATP-binding subunits C and D from Synechococcus elongatus PCC 7942

 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 39/315 (12%)

Query: 37  ASEPDAPVRIGYLPITDATPLLVAHNNGLFEAEGIKAERPVLLRSWAQVIEAFISGQVNV 96
           A+     VR+G+LP  D  PL +A   GLF+  G+  E    L +W  + ++   GQ+  
Sbjct: 274 AASQQKTVRLGFLPGNDCAPLAIAQELGLFQDLGLSVELQSFL-TWEALEDSIRLGQLEG 332

Query: 97  IHLLS--PMTVWARYGSKVPAKVVAWNHVGGSGLTVA-------PGITDVKQL------- 140
             +++  P+ +    G   P  +     V  +G  +A        G+  ++ L       
Sbjct: 333 ALMMAAQPLAMTMGLGGHRPFAIATPLTVSRNGGAIALSRRYLNAGVRSLEDLCQFLAAT 392

Query: 141 -GGKSVAIPFWYSIHNVVVQQLFRDNGLTPVARAAGSVIAANEVNLIVLPPSDMPPALAS 199
                +AIP   ++  ++++      GL P            +V L+ + P +M  AL +
Sbjct: 393 PQRLRLAIPDPIAMPALLLRYWLASAGLNP----------EQDVELVGMSPYEMVEALKA 442

Query: 200 QRIDGYIVAEPFNALAENLKVGRVQRFTGDVWRNHACCVVFMHEHDLANRPQWSQKVVNA 259
             IDG+   E   ALA       V     D+W  H   V+ + E  L   P+ +  + +A
Sbjct: 443 GDIDGFAAGEMRIALAVQAGAAYVLATDLDIWAGHPEKVLGLPEAWLQVNPETAIALCSA 502

Query: 260 IVKAQVWTRD--NREEAVKLLSKDGPNRYTPHAEPVLSKVLAPAAGDRAAYLADGAIQHG 317
           ++KA     D   R+  V++L +  P      A  VL +      GD    +        
Sbjct: 503 LLKAGELCDDPRQRDRIVEVLQQ--PQYLGSAAGTVLQRYFDFGLGDEPTQIL------- 553

Query: 318 NWDEHRIDFQPYPFP 332
            +++  +D   YP P
Sbjct: 554 RFNQFHVDQANYPNP 568