Pairwise Alignments

Query, 289 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 375 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 21/280 (7%)

Query: 17  VLAYIDANLEGDLSVKTLSHVANFSAFHFHRQFTAFVGVTVSRYVQLMRLRRAAHRLASL 76
           V  YI+ +L  DL  + LS +   S +HF R F A  G ++  Y+Q +RL   A +L S 
Sbjct: 106 VQEYINCHLFDDLDSEKLSQIVCISKYHFRRLFKAVCGDSLGNYIQRLRLEYIAFKLIS- 164

Query: 77  ADHSVLDAALGAGFESPEAFCRAFRRAFGMTPSAFGKEPNWQVWSTVFAIPHFSRTIIMQ 136
            + SV +      +++     RAF+  F  +   F K  +        A       I ++
Sbjct: 165 TNVSVSEILSQINYQNKHTLSRAFKNYFNCSIPEFRKRHS-------NACSEGKNPIQIE 217

Query: 137 VRIVEFPEVRVATLE-----HCGPA-GLVNESVRKFIEWRMQSGQSPVASSRTFGIPYGN 190
             I   P  R+A L+     H   +  ++ + V +F E      +     S T   P+  
Sbjct: 218 PSIERVPHTRIAYLKLERTHHVSHSFSVLWKQVLQFSESYGLLSKGCKYVSLTLDYPF-- 275

Query: 191 PDTTPPQEFRFAICGEIHEAVASNE-FGVHEIVIPGGRCVVVRHAGSPDHIGETIYPIYR 249
              T  ++ RF +   + ++    + FGV+E+  P G   + R  G    +      IY 
Sbjct: 276 --ITLEEQSRFMVGVTLPQSFKIPKGFGVYEV--PAGEYAIFRFKGLYHELNRVYRYIYL 331

Query: 250 DWLPASGEELRDQPLFFHYLSAYPETPQDQWQTDVYVPLQ 289
           DWLPA+   LR+   F  Y++   +TP  +  TD+Y+P++
Sbjct: 332 DWLPANDYSLREPFTFETYINTPEKTPVSELITDIYIPVK 371