Pairwise Alignments

Query, 307 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 330 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  170 bits (430), Expect = 5e-47
 Identities = 117/286 (40%), Positives = 159/286 (55%), Gaps = 11/286 (3%)

Query: 11  MKLAAVTMIWGGTFVAGRYLSGTVDPLLAASLRFALASLALLGFLGLAR--IPLARPSPR 68
           ++LA  T +WGGTF AGR     + PL  A  R+ LA+  LL  L       PL R   R
Sbjct: 22  LQLAIATALWGGTFTAGRIAVQQLSPLAVACGRYLLATTVLLLILWQREGWPPLNR---R 78

Query: 69  QLLQLGMLGFFGIFFYNLCFFYGLQSINASRASLIVALNPAVIGLASRWLFKERLGASNV 128
           Q L L  LG  GI  YN  FF GL  I ASRA+LI+ALNP  I L +     +RL +   
Sbjct: 79  QQLLLFGLGVSGIALYNWLFFIGLSLIPASRAALIIALNPTAIALGAAIWTGDRLRSWQW 138

Query: 129 AGILLCLTGAAVVIVSRNPHVLNEATSSWRGDLLIFGCVVGWGIYSLFSRGLNQSLGPLQ 188
           AG+ L L GA +++ SR    L      W GDL + GCV+ W +YSL +R   +SL PL 
Sbjct: 139 AGVGLSLIGAILLLGSRQAGALT--LPGW-GDLALVGCVLCWTVYSLLARQALRSLSPLT 195

Query: 189 TVTWSILLGTLMLTLTTLIMGRFTLEAMGRLQTAQGLSLAYLGVLGSALAYIGYYDGIRR 248
             T +   G+++L    L  G    +    +  + G ++A+LG+ G+ALA+  Y +GI R
Sbjct: 196 VTTGACCWGSVLLIGLWLGQGA---QLPVNVSFSTGSAIAFLGLGGTALAFCLYANGIER 252

Query: 249 IGATRSGVFIALNPLTAVICGALLLDEPLSLPMLIGGAVILLGIYL 294
           +GA R+G+FI L P+     GALLL EPLS   L+GG ++L G+ L
Sbjct: 253 LGAARAGLFINLVPVFGSAIGALLLQEPLSGLTLLGGLLVLAGVGL 298