Pairwise Alignments

Query, 307 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 289 a.a., integral membrane protein PecM from Phaeobacter inhibens DSM 17395

 Score = 80.9 bits (198), Expect = 3e-20
 Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%)

Query: 14  AAVTMIWGGTFVAGRYLSGTVDPLLAASLRFALASLALLGFLGLARIPLARPSPRQLLQL 73
           A   MIWG +++    L     PLL A LR   A L L+  L + ++P     PR LL L
Sbjct: 10  ALAPMIWGSSYIVTTTLLPGQSPLLVALLRALPAGLLLM--LMVRQLPPLNWVPR-LLVL 66

Query: 74  GMLGFFGIFFYNLCFFYGLQSINASRASLIVALNPAVIGLASRWLFKERLGASNVAGILL 133
           G L F    F++L F    + +    A+ + A+ P V+   S  + K  +  + V    L
Sbjct: 67  GALNFS--IFWSLLFVAAYR-LPGGVAATLGAVQPLVVVFLSALMLKTPVRTAAVLAAGL 123

Query: 134 CLTGAAVVIVSRNPHVLNEATSSWRGDLLIFGCVVGWGIYSLFSRGLNQSLGPLQTVTWS 193
            + G A+++++  P    +    + G  L     +  G+  + SR     +  L    W 
Sbjct: 124 SILGVALLVLT--PSAQLDGIGVFAG--LAGAIAMAAGV--VLSRKWQPPVSLLTFTAWQ 177

Query: 194 ILLGTLMLTLTTLIMGRFTLEAMGRLQTAQGLSLAYLGVLGSALAYIGYYDGIRRIGATR 253
           +  G L+L   TL    ++L A  +L     L LAY+ ++G A  Y+ ++ GI R+  + 
Sbjct: 178 LTAGGLLLIPVTL----WSLPAFPQLSAENLLGLAYMSLIGGAATYVLWFRGIARLEPSV 233

Query: 254 SGVFIALNPLTAVICGALLLDEPLSLPMLIGGAVILLGIYL 294
             +   L+PL+AV+ G + L E L+     G  + L  ++L
Sbjct: 234 VSLLGVLSPLSAVVLGWVFLGEVLTAKQATGAGLALFSLWL 274