Pairwise Alignments

Query, 293 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

 Score =  113 bits (282), Expect = 6e-30
 Identities = 79/288 (27%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 3   KGVVLSVLASVLFAVMYYFTSLLTPLSGLEIFGWRMLLTVPCMTVFMIVSGEWRRVWELL 62
           KG++L++ A  ++ +   +   L  +S LEI   R++ +   + V + +   WR V  ++
Sbjct: 12  KGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVV 71

Query: 63  QLLAAKPRLIAGVLLSSALLGVQLWLFMWAPLNGRSLDVSVGYFLLPLTMVLTGRLVWGE 122
                 PR    +L+++ L+G    +F+W+      LD S+GY++ PL  VL G L  GE
Sbjct: 72  HT----PRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGE 127

Query: 123 QLSYLQRIAVFFAALGVLNELYQAGGFSWATLVVIIGYPVYFIVRKYLKTDHLGGLWLDM 182
           +L  LQ  AV  AA+GV  +L   G      + +   +  Y ++RK ++ D   GL+L+ 
Sbjct: 128 RLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQTGLFLET 187

Query: 183 ALMLPVA----WWFVQSGEQGFAVMDAHPKLYALIPMLGLISASALVSYIIASRLLAFSL 238
             MLP A     W   +     A+     +L  L+   G+++   L+ +  A+  L  S 
Sbjct: 188 LFMLPAAAIYLIWLADTPTSDMALNTW--QLNLLLVCAGVVTTLPLLCFTGAAARLKLST 245

Query: 239 FGLLSYVEPVLLLAVA-LILGEGIKGGEWLTYIPIWLAVMVLVFEGFK 285
            G   Y+ P L+  +A L+ GE     + +T+  IW A+++   +G K
Sbjct: 246 LGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLK 293