Pairwise Alignments

Query, 1167 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  217 bits (552), Expect = 6e-60
 Identities = 210/806 (26%), Positives = 344/806 (42%), Gaps = 118/806 (14%)

Query: 253  TLNMLGRNILQFFAQYMGSAVAALYVREEHGGLKRIATYGFSREQEQKEQSIYSDEGIVG 312
            T   L   + QF   +    +  LY+ + +G L RIA  G    Q +  Q  YSD     
Sbjct: 322  TTEALCNQVTQFLLHHFPVELIGLYLYQ-NGVLTRIAGVG----QSESAQRDYSDPTTTH 376

Query: 313  QAAQLDRLIRLDDVPVDYFKVSSGLGEGSTRSVLVMPTSDDDRVNGVVELGFLRPLEERD 372
             +                F+V S  G  +   V  +P   +++   ++ELG +  L  + 
Sbjct: 377  CSVLRSGKPYAMKSLNGNFQVVSTSGVIALNEVYYLPLQVNNQPIALLELGTVGMLTMQQ 436

Query: 373  VELLELIAGNIGTSIEAARY--RQRLQE-VLAETQQLNEELQ----------VQQEELKT 419
               L  +  ++  +I+ ++   +QRL E  + E  QLN+E+               +  T
Sbjct: 437  YHWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLT 496

Query: 420  ANEELEEQSRILKESQAHLETQQAELEQTNEQLAEQTETLAEQR---------------- 463
             N +  +   +        E Q+    +  E+ A   + L +Q+                
Sbjct: 497  VNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQ 556

Query: 464  -----------DAMDRKN---------VELNKAQLELEDRAEELERSSKYKSEFLANMSH 503
                       D  D+ N          E  + + EL    E  +  S+ K +FLANMSH
Sbjct: 557  REMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSH 616

Query: 504  ELRTPLNSSLILAKLLAENPQENLSAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKL 563
            E+RTP+N+ L +A L    P   L   Q K+   I  +  +LL +INDILD SK+EAGKL
Sbjct: 617  EIRTPMNAILGMAHLALNTP---LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKL 673

Query: 564  EVLPENASVARLVDGLRGMFEPLAADRKLGFQVDVQEGSPTMLFTDRQRLEQILKNLLSN 623
             V   + ++  ++D +  +    A ++ + F +D+    P  L  D  RL Q++ NL  N
Sbjct: 674  NVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGN 733

Query: 624  AIKFTEQGEVSLS--VSRAPGEGIA--FTVRDSGIGIAPDQQESIFEAFRQADGTTNRRY 679
            A+KFT QGE+ LS  VS+   + +   F V+D+GIGIA D+ + +F+AF QAD +  R+Y
Sbjct: 734  AVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQY 793

Query: 680  GGTGLGLSISRDLATLLGGYISVSSEPGKGSVFTLVVPEQYVEREEDAAPIEQPRQVVVA 739
            GGTGLGLSIS+ L  L+GG I+V SE GKGS F   V    V   +DA            
Sbjct: 794  GGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSV----VCGLQDA------------ 837

Query: 740  PAPVPTPVKVSALPVADASQ-IPRFADDRDKAPFATRCILVVEDEPNFARILFDLAHELG 798
                          + D SQ +   AD R         +LVV+D  +   IL  L   + 
Sbjct: 838  -------------KMRDISQPVHGLADKR---------VLVVDDNDSARHILDSLLTAMR 875

Query: 799  YNCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTVLQRLKEHANTRHIPVHVISV-- 856
            +N +      E  S  ++   D + +D  +P  +G+ +L R+K      H+   +++   
Sbjct: 876  FNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYG 935

Query: 857  -EDRVEAAMHMGAIGYAVKPTTREELKDVF---------------ARLEAKLTQKVKRVL 900
             E  ++           VKP     L D                 A   ++     + +L
Sbjct: 936  REINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSLL 995

Query: 901  LVEDDDLQRDSIARLIGDDDIEITDVGYAQAALDLLRTHIYDCMIIDLKLPDMLGNELLK 960
            LVED+++ ++    L+ D  + +    + Q AL+ L    +D +++D+++P M G    +
Sbjct: 996  LVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATE 1055

Query: 961  RMATEDICSFPPVIVYTGRNLTRDEE 986
             +         P++  T   +  D E
Sbjct: 1056 HIRANPRWHSLPIVAMTANAMAIDIE 1081



 Score =  148 bits (373), Expect = 3e-39
 Identities = 93/265 (35%), Positives = 142/265 (53%), Gaps = 7/265 (2%)

Query: 897  KRVLLVEDDDLQRDSIARLIGDDDIEITDVGYAQAALDLLRTHIYDCMIIDLKLPDMLGN 956
            KRVL+V+D+D  R  +  L+      +  V     AL  ++   +D + +D  +P M G 
Sbjct: 852  KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 957  ELLKRMATEDICSFPPVIVYTGRNLTRDEEAELRKYSRSIIIKGARSPERLLDEVTLFLH 1016
            ELL R+ T  +       + T      + + E  K   ++I+K   +P  LLD +     
Sbjct: 912  ELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPV-NPSNLLDAIV---- 966

Query: 1017 KVESQLSHDRQKMLKTARSRDKVFEGRKILLVDDDVRNIFALTSALEHKGAVVVIGRNGR 1076
                 + H R K  +   +    F G+ +LLV+D+  N       L+  G  VV+  +G+
Sbjct: 967  -TSYGIEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQ 1025

Query: 1077 EAIDKLNEVEDIDLVLMDVMMPEMDGYEATALIRQDPRWKKLPIIAVTAKAMKDDQERCL 1136
            EA+++L E  D DLVLMD+ MP MDG  AT  IR +PRW  LPI+A+TA AM  D ERCL
Sbjct: 1026 EALERL-EHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCL 1084

Query: 1137 AAGSNDYLAKPIDLDRLFSLIRVWL 1161
             AG ND+L+KPI++D+ + ++R +L
Sbjct: 1085 QAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 764  ADDRDKAPFATRCILVVEDEPNFARILFDLAHELGYNCLVAHGADEGYSLAEEYIPDAIL 823
            A    +  FA + +L+VED      +   L  + G N +VA+   E     E    D +L
Sbjct: 981  AHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVL 1040

Query: 824  LDMRLPDHSGLTVLQRLKEHANTRHIPVHVISVEDR---VEAAMHMGAIGYAVKP 875
            +DM++P   G+T  + ++ +     +P+  ++       +E  +  G   +  KP
Sbjct: 1041 MDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKP 1095