Pairwise Alignments

Query, 556 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 801 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  272 bits (695), Expect = 4e-77
 Identities = 166/430 (38%), Positives = 248/430 (57%), Gaps = 18/430 (4%)

Query: 131 GRRRQYEARDRLIDLSESELRLQRTLETLEQQVEERTAQLRHNEEALRQSQKMEAVGQLT 190
           G R    ARD   +++  + +L      L  Q++ER       E  L+Q Q++EAVGQLT
Sbjct: 378 GGRIYSAARDITSEIAAVD-KLAEANRELRAQIQER----ERVEATLQQMQRLEAVGQLT 432

Query: 191 GGIAHDFNNMLTGIIGSLELLRRRVSRGKLDDLD-SLIDLGVTSANRAAGLTHRLLAFSR 249
            G+AHDFNN+LT I+ S   L+  + +G   +     +     S  R A LT +LLAF+R
Sbjct: 433 AGVAHDFNNLLTVILTSASFLQNDLEQGAPAERSLRRLQYIRESGERGATLTSQLLAFAR 492

Query: 250 RQSLDSKPVEINQLVVSMGELLQRSINESIKLDMRLTGELWTAEADPNQLESALLNLVIN 309
           RQ L    +++N  +VS+  LL+ ++  S+ ++      +W A  DP Q+E  +LNL IN
Sbjct: 493 RQQLTPTAIDLNDTLVSLLSLLKSTLGGSVSIETDTQANIWHALVDPTQIEMIILNLAIN 552

Query: 310 ARDAMPGGGQLLVETSNRHLDNVFTAAYGTLTPGDYVELSVSDTGCGIPENVMGRVFDPF 369
           ARDAM   G+L + T N  +      A    +PG+YV LSV+DTG G+ E V+ + F+PF
Sbjct: 553 ARDAMGDSGRLTLGTRNVVITEPALRAEDP-SPGEYVVLSVTDTGTGMSEEVLSKAFEPF 611

Query: 370 FTTKPIGQGTGLGLSMIYGFARQSRGHVTLHSEVGKGTTVSLFLPR----FIGEITANLP 425
           FTTK +G+G+GLGL+ ++GFA+QS G   + S  G GTTV +FLPR       E TA L 
Sbjct: 612 FTTKEVGKGSGLGLAQVFGFAKQSGGGARIESRPGAGTTVKVFLPRTEPPAATEPTAALS 671

Query: 426 ADPTLPPFANAGETVLIVEDDPAVRVLVSAVLKELGYAFVEASDADTAVPIIESDQRIDL 485
           A        N+   +L+V+DD AVR + + +L+ LG+A +EA   + A+ ++     +DL
Sbjct: 672 AGSQED---NSQHRILLVDDDHAVREVTAQMLQNLGFAVIEADSGEHALQLLGEGIEVDL 728

Query: 486 MISDVGLPGMNGRQLAEIGRQIRPDLKVLFITGYAEHAAVRGGFLDPGMQLITKPFTFDL 545
           +++D  +PGMNG +LA   R  +P+L V+F+TGYAE   +  G +  G  +I KPF  D 
Sbjct: 729 LLADFAMPGMNGGELARAVRVGQPELPVIFVTGYAELCEL--GLV--GYSIIQKPFREDQ 784

Query: 546 LTAKVREMIR 555
           L  K+   +R
Sbjct: 785 LANKIHLALR 794



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 434 ANAGETVLIVEDDPAVRVLVSAVLKELGYAFVEASDADTAVPIIESDQR--IDLMISDVG 491
           A+   +VL +ED P    L    L+  GY  +      +   ++E+ QR   DL+++D  
Sbjct: 3   ASKNISVLFIEDSPHDAELAQLALERSGYT-LHTELVYSHAGVVEALQRRSFDLILADFI 61

Query: 492 LPGMNGRQLAEIGRQIRPDLKVLFITGY--AEHAA--VRGGFLD 531
           LPG +G Q  +  +++ P    +F++G    EHA   +R G +D
Sbjct: 62  LPGFSGSQALQEAQRLAPQTPFIFLSGVFGEEHAVNMMRSGAVD 105