Pairwise Alignments

Query, 499 a.a., circadian clock protein KaiC from Pseudomonas simiae WCS417

Subject, 560 a.a., circadian clock protein KaiC (NCBI) from Rhodospirillum rubrum S1H

 Score =  133 bits (335), Expect = 1e-35
 Identities = 128/493 (25%), Positives = 212/493 (43%), Gaps = 42/493 (8%)

Query: 11  KAATGIEGLDDILAGGLSRSHLFLLEGEPGTGKTTVALHFLQAGAKN-GETSLYITLSET 69
           K+ TGI G D++  GGL      L+ G  G GKT  A  FL  G K+  E  ++++  E 
Sbjct: 9   KSRTGIAGFDELTLGGLPTGRPTLVCGSAGCGKTLFAATFLVHGVKDFDEPGVFVSFEER 68

Query: 70  ERELRQGATSHGWDLDDNIHIFELTPPESLLNAEH----QQSLLYSSDLELGEATRQIFE 125
             ++     S G+ LDD I        E  +  EH       +    D +L     ++  
Sbjct: 69  PVDIIDNVASLGFHLDDLIE-------EGRVVIEHIAVDPSEVAEIGDYDLEGLFLRLEL 121

Query: 126 VVERVKPTRVVVDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDD-----LTTE 180
            ++ +   RVV+D++  +     +    R +I  +  +      T ++  +     LT +
Sbjct: 122 AIDTIGAKRVVLDTIESLFSAFSNPAILRAEIRRLFDWLKEKGMTTVITGERGEGSLTRQ 181

Query: 181 SLDKTVHSVAHGVIRLEELTPNYGAERRRVRVVKYRGQKYRGGFHDFTIMQGGVHVFPRL 240
            L++ V      V+ L+    N     RR+R+VKYRG  +    + F I + G  V P  
Sbjct: 182 GLEEYVSDC---VLLLDHRVENQ-ISTRRLRIVKYRGTNHGTNEYPFLIDEDGFSVLPVS 237

Query: 241 VAAEHRGGYNRQTLTSGIRELDALL-GGGIETGSSSLILGPAGTGKSLISMIFAAAAVAR 299
                   Y+ + +++G+ +LDA+L GGG   GSS L+ G AG+GKS ++  F  A    
Sbjct: 238 ALGLSHKIYDER-ISTGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRA 296

Query: 300 GEKAALFIFDEELGLLFERMKNMGIDLAALQATGNLFIEQVDAAELTPGEFSHRVRRCVD 359
           GE    F F+E        MK++GIDL    A+G     Q+      P  +S  +   + 
Sbjct: 297 GESVIYFSFEESHEQATRNMKSIGIDLGQWMASG-----QLKYIATRPTFYSLEMHLAIV 351

Query: 360 ERGI-----KTVVIDSINGYQAAMPEENALILHMHELLL----YLNRRGAATFMTVAQHG 410
            R +       V++D I+ +      E+   L +  +LL    +L  RG     T     
Sbjct: 352 LREVIKLKPSLVILDPISAF-----TESGERLEVQGMLLRIVDFLKSRGVTGVFTHLMQS 406

Query: 411 LVGDMQAPVDITYLADTVILLRYFEAIGEVRRAISIIKKRTGTHESTIREYRIGSRGMTV 470
               ++    ++ L D  ILL   E  GE  R + ++K R   H + +RE+ +   G+++
Sbjct: 407 GDNLIKTDAGLSSLMDAWILLLNREVNGEFNRELYLLKARGMEHSNQVREFVMSRSGISL 466

Query: 471 GEPLNNFQGVLRG 483
             P     G L G
Sbjct: 467 LPPYIGEGGALTG 479



 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 27/277 (9%)

Query: 1   MSTSNELLSEKAATGIEGLDDILA-GGLSRSHLFLLEGEPGTGKTTVALHFLQAGAKNGE 59
           +  S+++  E+ +TG+  LD +L+ GG  R    L+ G  G+GK+++A  F+ A  + GE
Sbjct: 239 LGLSHKIYDERISTGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRAGE 298

Query: 60  TSLYITLSETERELRQGATSHGWDLDDNIHIFELTPPESLLNAEHQQSLLYSSDLELGEA 119
           + +Y +  E+  +  +   S G DL   +           L     +   YS ++ L   
Sbjct: 299 SVIYFSFEESHEQATRNMKSIGIDLGQWM-------ASGQLKYIATRPTFYSLEMHLAIV 351

Query: 120 TRQIFEVVERVKPTRVVVDSLSEI-----RLLAQSSLRYRRQILAIKHYFVRYDATVLLL 174
            R++     ++KP+ V++D +S       RL  Q  L   R +  +K   V    T L+ 
Sbjct: 352 LREVI----KLKPSLVILDPISAFTESGERLEVQGML--LRIVDFLKSRGVTGVFTHLMQ 405

Query: 175 DDLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVVKYRGQKYRGGFHDFTIMQGGV 234
                   D  + S+    I L     N G   R + ++K RG ++     +F + + G+
Sbjct: 406 SGDNLIKTDAGLSSLMDAWILLLNREVN-GEFNRELYLLKARGMEHSNQVREFVMSRSGI 464

Query: 235 HVFPRLVAAEHRGGYNRQTLTSGIRELDALLGGGIET 271
            + P  +     GG     LT   R+++      +ET
Sbjct: 465 SLLPPYIG---EGG----ALTGSARKIEEARQARLET 494