Pairwise Alignments

Query, 304 a.a., integrase from Pseudomonas simiae WCS417

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 71.2 bits (173), Expect = 3e-17
 Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 12/228 (5%)

Query: 62  LREDGYAPNTSSLYVNAVRGVMNEAWRLNLISQEHLLRMRTVKAAPGTRLSQGRNLRRSL 121
           L E  Y P + +  ++A+R +     R  + + +    + + K    TRL   ++L  + 
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLP--TRLP--KDLSEAQ 121

Query: 122 IREMMEVCAADPR-PQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERSLRVIGKGNK 180
           +  ++   A DP+ P  LRD A++ +LY +G+R +E V+L +  ++  +  +RV+GKG K
Sbjct: 122 VEALLS--APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGK 179

Query: 181 ELIKYAPDWAFAKLQAWLAFRREQLKEGEHDDSFLFNRIRRGSHITRERITKHAIYYIAR 240
           E +    + A   ++ +L   R  L  GE     +F    RG  +TR+    H I + A 
Sbjct: 180 ERLVPMGENAIEWIETFLQQGRSLLL-GEQTSDIVFPS-SRGQQMTRQTFW-HRIKHYAV 236

Query: 241 QRGQQVGVKIMPHDFRRSFITRVIE-EHDLSIAQKLAHHTNIQTTASY 287
             G  V  K+ PH  R +F T ++    DL + Q L  H+++ TT  Y
Sbjct: 237 IAGIDV-EKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIY 283