Pairwise Alignments

Query, 304 a.a., integrase from Pseudomonas simiae WCS417

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 6e-19
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 17/237 (7%)

Query: 55  VIALVAALREDGYAPNTSSLYVNAVRGVMNEAWRLNLISQEHLLRMRTVKAAPGTRLSQG 114
           V A +A   E  +A  +S+  ++++R   N   +   IS + + ++ + K +        
Sbjct: 58  VRAYLAYRVEQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLS-------- 109

Query: 115 RNLRRSLIREMMEVCAADPR---PQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERS 171
           R+L  SL    ++   A+P    P   RD A++ +LY +G+R SE V L + Q++  +  
Sbjct: 110 RHLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGL 169

Query: 172 LRVIGKGNKELIKYAPDWAFAKLQAWLAFRREQLKEGEHDDSFLFNRIRRGSHITRERIT 231
           +R+IGKG KE +    + A  +++ +L   R +L    H  S +    +R   +TR+   
Sbjct: 170 VRIIGKGGKERLVPMGEMAITEVEHYLTSARHELL--GHIQSDVVFPSKRSQMMTRQTFW 227

Query: 232 KHAIYYIARQRGQQVGVKIMPHDFRRSFITRVIEE-HDLSIAQKLAHHTNIQTTASY 287
            H I   A + G  +  ++ PH  R +F T ++    DL + Q L  H+++ TT  Y
Sbjct: 228 -HRIKLYASRAG--IETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIY 281