Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

 Score =  330 bits (847), Expect = 4e-95
 Identities = 191/442 (43%), Positives = 260/442 (58%), Gaps = 38/442 (8%)

Query: 6   SLLALAVCAGISQMAFAESVTDQADSKGFIEGSSVTGLLRNYYMNRNREGGRADNIDWTQ 65
           S++ALAV A  SQ A A S   Q +SKGFIE  S+T L R  YMNR+ +   + +  + +
Sbjct: 7   SMIALAVSASTSQFAMASS---QEESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQSYRE 63

Query: 66  ----GAMLNYASGFTQGTIGFGVDAYAYGGLKLDATHADAGTGNLPTDRHGDPEDAYGSV 121
                A   Y SGFTQGT+G GVD +A+G +++D     AG G    D  G+ ED    V
Sbjct: 64  ESGVAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGNGLFARDSDGNLEDTQSKV 123

Query: 122 GAAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTATGFDLTSSEIAGLDLEAGHFTST 181
           G AVK ++S T LK+G+   T+PVF+T  +RLLP+ ATG  +TS EI GL+L AGHF + 
Sbjct: 124 GGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSAGHFNAI 183

Query: 182 NSGMTSNHDHDIYATYANIAANSASFLGGKYTFSPSLSATVYAGELEDIWRQYYTNLNYV 241
           +S      D         +   SA  +G  Y F+ +  A V A ++ED +++ Y NLNY 
Sbjct: 184 SSQTGMGDD--------GLGLKSADIVGATYQFTDNFVAGVAASDVEDHYKKKYINLNYT 235

Query: 242 IPLVHDQSLALDGNLYRTLDTGSAKAGAINNTTYSLAAAYSFLQAHTLTLSFQKVHGDTP 301
           +P+  DQSL  D N Y + D G   +G ++N  +SLAAAY+ + AH  TL+ Q+  GDT 
Sbjct: 236 LPINEDQSLNFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYA-IGAHKFTLAHQRSSGDTG 294

Query: 302 FDYIGTGNNGAGEGGDSVYLANSVQWGDFNGPGEQSWGIRYDLNMASYGVPGLSFMGRYI 361
           + Y         +GG +++LANS+Q+ DFNG  E+SW  RYDLNM +YGVPGLSFM RY+
Sbjct: 295 YVY-------GVDGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYV 347

Query: 362 NGSDINGTHTPDHSAYAGDYGDDGAHHETDLEAKYVIQSGPAKNLSLRVRDAIVAANADQ 421
            G +I               G +G  HE D E KYV+QSGPAK+LS RVR A   AN+D 
Sbjct: 348 TGDNIE------------TGGAEGKEHEWDFETKYVMQSGPAKDLSFRVRAAFYRANSDY 395

Query: 422 ---RDGDLNELRLIVDYPFTLL 440
                 D N+ RLI++YP ++L
Sbjct: 396 NAINGNDNNDTRLIIEYPLSIL 417