Pairwise Alignments

Query, 300 a.a., multidrug DMT transporter permease from Pseudomonas simiae WCS417

Subject, 296 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 85.5 bits (210), Expect = 1e-21
 Identities = 66/279 (23%), Positives = 124/279 (44%), Gaps = 7/279 (2%)

Query: 3   TSIRRGSWEMIAAMLISGTIGWFVLVSGVSVIEVVFWRCVIGGLTLLLVCALLG-YLRLD 61
           +S R G  E+  A+L+ G    F  +  +S +++   RC I  L L L+  + G +LRL+
Sbjct: 5   SSERSGLIELHLAVLLFGGTALFSKLIPLSALDITALRCCIAALALALLVKVSGKHLRLN 64

Query: 62  LLNGAKLGLAMLSGVAIVGNWLLLFESYSRASIAISTAVYNVQPFMLVMLAAVFLGEKIT 121
              G   G+A+  G+ +  +W+  F +   +S+AI    +   P M V++   F G+++ 
Sbjct: 65  --RGKDYGIALGLGIIVSLHWVTYFAAMQLSSVAIGMIAFFTYPVMTVLVEPFFTGKRLE 122

Query: 122 VQKLAWLSIAFLGMLAIVTAHGDQQTGDDYLAGIALALGAAFLYAIAALIIKRLKEVPPH 181
           +  +       LG+  ++    +   G+D   GI + + +A L+    L+ KR       
Sbjct: 123 LADIISGICVLLGVSLLIP---EANLGNDVTLGIIIGVLSAALFTARNLLHKRYFASYSG 179

Query: 182 LMALI-QVTTGALLLAPMVPWNSLPATTNAWAALVTLGVVHTGLMYVLLYGAIQKLPTAI 240
             A+  Q    AL L P +  +      N W  ++ LG+V T   + L   A+++L    
Sbjct: 180 AQAMYYQTGVSALFLLPWLEVDPSAIQANVWWLVILLGIVFTAAPHALFTSALRQLSAKT 239

Query: 241 TGALSFIYPIAAIFVDWIAFGHRLGWLQWLGVAAILLAA 279
              +S + P+    +  +  G  L     +G A ++  A
Sbjct: 240 VSLVSCLQPLYGALLALLILGEGLAMKTLIGGALVVFTA 278