Pairwise Alignments

Query, 325 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (528), Expect = 2e-58
 Identities = 130/301 (43%), Positives = 178/301 (59%), Gaps = 15/301 (4%)

Query: 25  LPVLILLLVGFALASENFLTMQNLSIISQQASVNVVLAAGMTFVILTAGIDLSVGAILA- 83
           L  L+ L+V  +  + NF T+ NL  I +Q SVN ++A GMT VILTAGIDLSVG++LA 
Sbjct: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94

Query: 84  ----ASAVVALQASMSPQFGMFGIAAGIGFGLLLGLVNGGLIAFMRLPPFIVTLGALTAM 139
               A+ +VA++  +     +  +   +  G  LG ++G +IA  ++  FI TL  +T +
Sbjct: 95  CGAFAATLVAMEVPV-----LVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLL 149

Query: 140 RGLARLLADDKTVFNPDLP----FAFIGNDSLLGVPWLVIIAVAVVALSWFILRRTVMGV 195
           RG+  +  D + +          FA+ G    LG+P  V + V V A +W++L  T  G 
Sbjct: 150 RGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGR 209

Query: 196 QIYSVGGNPEAARLSGIKVWKVLLFVYAMSGALAGLGAVMSASRLFAANGLQLGQSYELD 255
            +Y+VGGN  A RLSGI V +V + VYA+ G LA L  ++  SRL +A     G  YELD
Sbjct: 210 YVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTA-GMGYELD 268

Query: 256 AIAAVILGGTSFTGGVGTIGGTLIGALIIAVLTNGLVLLGVSDIWQYIIKGIVIIGAVAL 315
           AIAAV+LGGTS  GG G I GTLIGALII  L N L LL VS  +Q I K +VI+ AV +
Sbjct: 269 AIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLV 328

Query: 316 D 316
           D
Sbjct: 329 D 329