Pairwise Alignments

Query, 492 a.a., long-chain acyl-CoA synthetase from Pseudomonas simiae WCS417

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.6 bits (218), Expect = 5e-22
 Identities = 99/425 (23%), Positives = 162/425 (38%), Gaps = 92/425 (21%)

Query: 143 LTFTSGTTGAPKGVCLSADSLLRVTRELHQASHSRDPRHHLALLPIAILLENLGCYAALY 202
           L +TSGTTG PKGV L   ++     +       +     LA LP++ + E    +  L 
Sbjct: 155 LIYTSGTTGDPKGVMLDYRNMASTVHQHDLILPFKTGDVSLAFLPLSHVFERGWSFYVLC 214

Query: 203 AGATLSLPSQKSLGIQGASAVDAAQLLGCLATRQPHSLILVPQLLLMLVIAAEQK----A 258
            G        +++ +Q    V  A     ++  +PH+L +VP+ L  +  A + K    A
Sbjct: 215 RGG-------RNVYLQNTQRVKEA-----ISAVRPHTLCVVPRFLEKVYSAVQDKVAKSA 262

Query: 259 FNPKSLRFAAVG------------------------------------------------ 270
              K L   A+G                                                
Sbjct: 263 EGRKKLFAWAMGVGERQFEVSQGRVKGGLWLSLQWRLANKLVYSKLQAVLGGRLKFMPCG 322

Query: 271 GARVSKALLQRAQQLGMTVYEGYGLSECASVVCLNHPEAHRPGSVGRPLPHVEIRLAEDG 330
           GA +   +      +G+ V  GYG++E  + V  N  +    GS G+ LP ++I+L +D 
Sbjct: 323 GAALDLNVASFFHAIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIQIKLGKDD 382

Query: 331 EVLVKGPMLL-GYLDQPDLHAP-----WWPTGDLGDVDEDGFLYLKGRKKHQFVTSYGRN 384
           E+LV+G  ++ GY ++P+  A      W  TGD G +D  G L++  R K    TS G+ 
Sbjct: 383 EILVRGDTVMRGYYNRPEDTAAAFEDGWLKTGDAGRLDAHGNLFITDRIKELMKTSNGKY 442

Query: 385 VNPDWVEAELTQGGIIAQAFVYGEALPENHALLWP----------------------LRA 422
           + P  VE  + +   I Q  V  +A     AL+ P                      LR 
Sbjct: 443 IAPQRVEGTVGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKEKGLKYESPIELLRH 502

Query: 423 DCSAAQLAAAVAEANTGLPDYAQVHRWTRLAEPFTTANGLLTANGRPKRDAIVARYQSDL 482
                     +      L  + Q+ ++T L E F+   GL+T   + +R  I  +Y  ++
Sbjct: 503 SHVVEHFEQRLKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKMIYHKYVHEI 562

Query: 483 TPELN 487
               N
Sbjct: 563 NAMYN 567