Pairwise Alignments

Query, 751 a.a., ATP-dependent DNA helicase from Pseudomonas simiae WCS417

Subject, 669 a.a., ATP-dependent DNA helicase from Methanococcus maripaludis JJ

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 129/637 (20%), Positives = 244/637 (38%), Gaps = 87/637 (13%)

Query: 178 FPHAGFRPGQRSLAESVYKAVSTGRCLMAQAPTGIGKTIGTIFPLLKALAPQRLDKLFFL 237
           FP+ G RP Q  L   +Y+ V+  + L+ +APTG+GK   T+  L+ AL      K   +
Sbjct: 14  FPYHGMRPQQEVLMGKIYECVTKKKNLVVEAPTGVGK---TLSYLIPALYFAERGKRVMI 70

Query: 238 TAKTPGRKLALDAAQVLHASSPDQPLRVLELVARDKA-CEHLDKACHGDACPLAKGFY-- 294
             +T  ++  +    V   +S    L+V  ++ +    C+   +  +   C L KG    
Sbjct: 71  LTETIDQQERI----VEDLNSLKHNLKVSFMMGKGNFFCKSKGEKANTLYCQLNKGCIYR 126

Query: 295 -DRLPAARIAAAKVRL-LDQRNLRDVALAHDVCPYYLSQEMARWADLVVADYNYYFDFGA 352
            ++ P       K ++  D        L   +C Y  ++  +  A+++V + + Y+    
Sbjct: 127 PNKKPVCVCGTKKEKIEFDGNTTFYCPLC--LCDYQKAKIESFDANIIVMNNSIYYYLKD 184

Query: 353 MLFGLAQLNQWRAAVLVDEAHNLVERARSMYSASLD-QYHLKTLRETA----PEPLKQPL 407
            +    Q +     V+ DEAH L    R+  +  ++ +Y L+ LR  A       L+  +
Sbjct: 185 EIDKKKQTD----IVICDEAHKLEGSIRNAATIVINPKYALRRLRFMAYHYSNSRLRVHM 240

Query: 408 QRLNRAWNALHKDQLAPYQAYTARPEKLLQALSLCASAMGEYFNDHPESLSGDLQRFYFE 467
            R+    + +    +  Y    A  +    +L      +  +      ++ G L   Y E
Sbjct: 241 DRVTEEDDEIFWTIVEDYVVKNASGKDCKNSLVFDGFKITSFGLKEDVAILGTLLEGYNE 300

Query: 468 VLQFGKVAELFNEHFIFDISKRQLNGKRSSSTLC-----------LRNVVPAEFIRP--- 513
           +++  +  E  +E+   ++ K+ L  K  +  L            + +V   EF+     
Sbjct: 301 IVKIKEKIEDLSENE--ELEKKDLKFKIDNKALIPLELQFVADRRISDVPMVEFLENLGN 358

Query: 514 -----------------------------RLTAARSSVLFSATLSPRHYYADLLGLPADT 544
                                        RL    S V  SATL     +A   G+    
Sbjct: 359 LRNITGNFVVYKNNGSILCEPVLVSTYLNRLYGDASVVHCSATLGDLKIHAIKTGMGRSE 418

Query: 545 AWIDVESPFKAEQLHVRIVDE------ISTRFVHRHASLEPIVELIARQYTQQPGNYLAF 598
             + ++SPF  ++ ++  + +       S  F   +       E + +      GN L  
Sbjct: 419 TLL-LDSPFSKDRRNIIALSDGEDMKFNSIDFQSNNKKRNKANENLFKMVNAAKGNTLIL 477

Query: 599 FSSFDYLQQVAQLLAEKHPTITLWQQSRGMAEAERQAFLDQFTEHSQGIGFAVLGGAFGE 658
           F SF  L+   +   +      ++    GM     +   + F ++    G  +  G F E
Sbjct: 478 FKSFGDLKTAHEYFLDARYRGNIYCYESGMDGKAAKKLKEDFQKYG---GLLLATGRFAE 534

Query: 659 GIDLPGARLIGAFIATLGLPQLNPV--------NEQMKLR-MGAIFGAGYDYTYLYPGIQ 709
           G+D+PG  L    I +L  P   P+         E++K R +     + +  T  +   +
Sbjct: 535 GVDIPGDALTCVIIDSLPFPVPTPLLKREQTLLEERLKSRKVKDAHWSAFLMTSFHIMAR 594

Query: 710 KVVQAAGRVIRSQQDQGVVMLIDDRFGEARVRQLLPR 746
            V+Q  GR+IR++ D GVV++ D RF +    ++L R
Sbjct: 595 TVIQMIGRLIRTETDYGVVVIQDKRFNDWVGSEMLKR 631