Pairwise Alignments

Query, 577 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  222 bits (566), Expect = 3e-62
 Identities = 167/570 (29%), Positives = 286/570 (50%), Gaps = 31/570 (5%)

Query: 14  RLIRLGVAFAALGALVNLVPFIGLTELGRLLLA---GSADSQTLWLWAALVVIALSVGWM 70
           RL + G+  + +  ++N      +  L + LL    G+A+S  L +   +++  + V  +
Sbjct: 21  RLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGL 80

Query: 71  ASGVALWLTHVADHRLQSSLREAMVHKLGRVPLGWYTDTTSGAVRKVVQDDLEDLHHLVA 130
           +   + +        +   +R  + +    +P+ ++   ++G +   +  D E     VA
Sbjct: 81  SGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQ----VA 136

Query: 131 HHAVELTAAIVTPLAGLLWLATL----NWRLALLAVLTLPIYAVAYTLMMRGFGAKMQLL 186
                   +IV   A ++ L TL    +W+L+L+ ++  P+ A A + + + F    + +
Sbjct: 137 GATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNM 196

Query: 187 DKSMTRVSAAIVEFVHGIAVVKAFGQVGQAHRSYQQAVNQFSEQYAGWVRPLLRLEAFSS 246
             +M  V+++  + + G  VV ++G      + + +  N   +Q          ++  S+
Sbjct: 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ---------TMKLVSA 247

Query: 247 MALSVPVI-LLVSLGVGSLL-LAYGWITPLELFAETLVAVV-----IPQSLLVINQSLTA 299
            +++ PVI ++ SL + ++L LA       EL   T   V      + + L  +    + 
Sbjct: 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307

Query: 300 QRTALAAADRIEALLDVE-ELPTPKACVQPQGSDIRFEQVQFGYDA-EHLILKGVDLHCP 357
            +  +AA   +  L+D+E E    K   +    ++  + V F Y   E   L  V    P
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIP 367

Query: 358 AGSVTALVGASGAGKSTLAKLVPRFHDVNAGRICVGGADVREIDPRQLYRHVGFVLQDAQ 417
            G   ALVG SG+GKST+A L  RF+DV++G IC+ G DVR+     L RH   V Q+  
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427

Query: 418 LVHGTVADNLRLGRP-DASDAEVVAAARSAQIHARIQALPRGYQSVIGDDAV-FSGGEAQ 475
           L + T+A+N+      + +  ++  AAR A     I+ +P+G  +VIG++    SGG+ Q
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487

Query: 476 RVSIARTLLADTPVLILDEATSHADPESEALIQDALSALARGRTVLVIAHRLASISGVDQ 535
           RV+IAR LL D PVLILDEATS  D ESE  IQ AL  L + +TVLVIAHRL++I   D+
Sbjct: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547

Query: 536 IVVLDQGRVLESGCHEQLLKANGAYARMWR 565
           I+V+D+G ++E G H  LL  +GAYA++ R
Sbjct: 548 ILVVDEGEIIERGRHADLLAQDGAYAQLHR 577