Pairwise Alignments

Query, 581 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  220 bits (560), Expect = 1e-61
 Identities = 159/553 (28%), Positives = 269/553 (48%), Gaps = 29/553 (5%)

Query: 24  LVTSAVLQGLAVALLVPILHALFVGDLPSAMTWLAGLAAMVVLTCIAHYQQAMQGFALAL 83
           LV +A      ++LL P+L   F G+  S    +     + ++     + + + GFA + 
Sbjct: 34  LVINAAADTYMISLLKPLLDEGF-GNAESNFLRILPFMILGLM-----FVRGLSGFASSY 87

Query: 84  L-------VLTTLHDRLGQHLVSLPLGWFNSEKVGRLSRSATSGTLMVTGLFAHYLGPVV 136
                   V+  +  RL  H + +P+ +F+ E  G L    T  +  V G  +  L  +V
Sbjct: 88  CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIV 147

Query: 137 SGVVVPATVALTLFVFDWRLGLTAVLCAPLIYFAHHWSAAAIGSNDARVEAAATLAGNRV 196
                   +   +F   W+L L  ++ AP++ FA  + +         ++ A     +  
Sbjct: 148 REGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSA 207

Query: 197 VEFARYQQVLRAFGRTQDGYAPLQAANQAQKQAGGSMLSQTFPKLLAGGLT---VQLAFA 253
            +  +  +V+ ++G  +          +   +   SM  QT   + A  +    +Q+  +
Sbjct: 208 EQMLKGHKVVLSYGGQE-------VERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIAS 260

Query: 254 LLVGVGITLAA----HGEIDAIQLVALLALAARFVGPLAEAAARSGLLRMAGNDLDQLVG 309
           L +   + LA+      E+       + +     + PL    + +   +        L G
Sbjct: 261 LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320

Query: 310 ILREPSLPEPVVSQPLSAPGSLAFEQVSFAYPSGPT-VLQDLTFSAPAHSMTAIVGASGS 368
           ++   +  +    +     G +  + V+F Y       L  ++FS P     A+VG SGS
Sbjct: 321 LMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGS 380

Query: 369 GKTTVTRLLMRFFDTTTGSVKVGGVDVREQSSEALMAQLSLVMQDVYLFDDSLEANIRVG 428
           GK+T+  L  RF+D  +GS+ + G DVR+     L    +LV Q+V+LF+D++  NI   
Sbjct: 381 GKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA 440

Query: 429 SPDASARD-VAEAARLAGVDEIVARLPQGWNTPVGEGGASLSGGERQRVSLARALLKRAP 487
           +     R+ + +AAR A   E +  +PQG +T +GE G SLSGG+RQRV++ARALL+ AP
Sbjct: 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500

Query: 488 IVLLDEATAALDPHNEAFVQAAIQRLMQNSTVLVIAHRLPTIMAADQILVLDQGRLVESG 547
           +++LDEAT+ALD  +E  +QAA+  L +N TVLVIAHRL TI  AD+ILV+D+G ++E G
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560

Query: 548 THAQLLSLNGRYA 560
            HA LL+ +G YA
Sbjct: 561 RHADLLAQDGAYA 573